Squalius cephalus (European chub): 307158698
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Entry
307158698 CDS
T11930
Symbol
usp39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
scep Squalius cephalus (European chub)
Pathway
scep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307158698 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scep03041
]
307158698 (usp39)
Spliceosome [BR:
scep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
307158698 (usp39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
307158698
NCBI-ProteinID:
XP_079727648
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All DBs
Position
5:4438421..4453883
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AA seq
497 aa
AA seq
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MIAGVKRERDVDEDEEEEVRVKIGRGHVEDRRSRHCPYLDTINRSVLDFDFEKLCSISLS
HINVYACLICGKYFQGRGQKSHAYIHSVQFTHHVFLNLHTLKFYCLPDNYEIIDSSLEDI
TYVLKPTFTKPHISGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQALSNVPPL
RNYFLEEENYRGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK
NFQITKQGDAVDFLSWFLNALHGALGGTKKKSSILAKVFQGSMRIFSKKLPHPDLPPEEK
EALLLKEEYQEKMSESTFLYLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFNGNTEKEY
KTYKENFLKKFQLTKLPPYLIFCIKRFTKNNFFIEKNPTIVNFPITNVDLREYLTEEAQA
TEKFTTYDLVANVVHDGKPTEGSYRIHVLHHGTGKWYELQDLQVIDILPQMITLSEAYIQ
IWKRQDKEDGADSHKGA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcaggcgtgaaacgggagagggacgttgatgaagacgaagaggaagaagtgcgt
gtgaaaatcggccgtggtcatgttgaagatcgcagaagtcgccattgtccatatctggac
acaatcaataggagtgttttggatttcgacttcgagaagctttgctcaatctctctttca
cacattaacgtctatgcctgtctgatctgtgggaaatatttccaaggtcgaggtcagaag
tctcatgcgtacatccacagcgttcagttcacacaccacgttttcctgaatctccacacg
ttaaagttctactgcctgccagacaattatgagatcattgactcctcgttagaggacatt
acatatgtgctgaaacccacattcaccaagccgcacatctctggtttggataagcaggga
aagctgtacagagcctacgatggcaccacatatttacctggaattgtgggtctcaataat
atcaaggccaatgactatgctaatgtggttttgcaggcgctgtcaaacgtgccccctttg
cgaaactacttcctcgaggaggaaaactatcgtggaattcgccggccgccgggcgacatc
atgtttctgttggtgcagcgttttggggagctcatgcgcaagctgtggaacccccgcaac
ttcaaagcccacgtctcgccgcatgaaatgttgcaggctgtggtgttatgcagtaaaaag
aactttcagatcactaagcaaggggacgctgttgactttctctcctggttcctgaatgca
ttgcatggtgctcttggtgggacaaagaagaaatcatccatacttgccaaggtgtttcag
gggtccatgcgaatcttctcaaagaagcttccccatccagacttgcctcctgaagagaaa
gaagcccttctccttaaggaggagtaccaggagaagatgtcggagtccaccttcctctac
ctgacccttgacctgcccaccgcaccgctctacaaagatgagaaagagcagctcatcatt
cctcaggttcctctcttcaacatcctgggcaagttcaatggaaacaccgagaaggagtac
aagacctacaaagagaactttctgaagaagttccagctcaccaaacttcccccatacctt
atcttctgcatcaaacgattcacaaagaacaacttcttcattgagaagaacccaaccatc
gtcaacttccccatcacgaacgttgatctgcgcgagtacctcacagaagaagcgcaggct
actgagaagttcacgacctatgacctggtggccaatgttgttcatgatggaaaacccact
gagggttcctatagaattcatgttctgcatcatggcacagggaagtggtacgagcttcag
gacctgcaggtgattgacatccttccacagatgatcacactctctgaggcgtacatacag
atttggaagagacaagataaagaggatggagcagacagccataaaggggcgtag
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