Squalius cephalus (European chub): 307158971
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Entry
307158971 CDS
T11930
Symbol
tncb
Name
(RefSeq) tenascin isoform 1
KO
K06252
tenascin
Organism
scep Squalius cephalus (European chub)
Pathway
scep04510
Focal adhesion
scep04512
ECM-receptor interaction
scep04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
307158971 (tncb)
04518 Integrin signaling
307158971 (tncb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
307158971 (tncb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
scep00536
]
307158971 (tncb)
Glycosaminoglycan binding proteins [BR:
scep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
307158971 (tncb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_TEN
fn3
EGF_Teneurin
Fibrinogen_C
EGF_Tenascin
EGF_2
DUF7949
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Pur_ac_phosph_N
EGF
EGF_PEAR1L
hEGF
FN3_Tor_3rd
fn3_2
SPE9_EGF_3rd
Big_5
Motif
Other DBs
NCBI-GeneID:
307158971
NCBI-ProteinID:
XP_079728139
LinkDB
All DBs
Position
5:34371764..34407283
Genome browser
AA seq
1842 aa
AA seq
DB search
MGMRGLLLASVAVAVLVHLSSAGLVKRVIRHRRESLSPTTENLTLPSPDQPVVFNHVYNI
NVPTGSMCSVDMDSPGTTEIKPKSEQSDQHIEHTMDGENQIVFTHRINIPKQACGCDNHM
PDLKDLLNRLEMLEAEVSSLREQCTSGTSCCSAQVTGEVTTKPYCSGRGNYSTETCSCLC
EPGWKGVNCSEPECPNFCQDQGRCEDGKCICFEGFGGEDCSIELCPVDCGENGDCIDGAC
LCEEGFIGEDCSLTNCLNNCLGRGRCVDDECVCDEPWTGFDCSELICPNDCFDRGRCDNG
TCYCDEGFTGEDCGELTCPKNCNHRGRCVNGQCVCNIGYSGDDCSKLTCLNDCNQRGHCF
NGKCICDPGFEGEDCSILSCPDNCNDRGQCVDGECICDAGYEGDDCSELSCPNNCHDRGR
CVNGKCICKVGFAGEDCNIKTCPNDCHGRGECIDGKCICHDGFAGEHCGVKTCPHHCHGR
GQCVDGKCVCHNGFAGEDCSIKTCPNHCHGRGQCVDGKCVCHNGFAGEDCSIKTCPNHCH
ERGQCVDGKCVCHNGFAGEDCSIKTCPNHCHERGQCVDGKCICHDGFAGEDCSIKTCPND
CNDHGQCVDGKCVCHTGFTGHDCSELTCPSDCHNQGHCVNGQCVCNSGFTGEDCGTKMCP
NNCLDRGFCEDGKCICFEGYTGVDCSVLTCPENCNDQGQCLNGMCICDLGFTGDDCSEIS
PPRDLTVTIVDPETVDLTWVNEMLVTEYLITYVPTAPGGLEMEMKVSGEKKTATIRELEP
GIEYLISVFAVLNSKMSVPVSARIATHLPEPDGLKFKSVRETSVEVEWDPLNIPFDSWNL
IFRNTKEEDGEILNSLTPPETTFEQSGLGPGQEYEVKLEVVKNNTRGHPSSKNVVTMIDA
PSQVDMRDVTDTTALVTWFQPVAQVDGISVSYGPNTDSSDRNTVKLSSMDTQYHLAELYP
DTEYEVSLMAHRGEMTSFPVYETFTTDLDAPKQLKAVEQTDESITLEWKNSRANILNYRV
KYGPLSGGEHGELVFPSGPQDTTQAKITGLRPGTEYGMGVTSIKEERESLPATTNAVTDL
DAPKELQVSETTETTLTLVWRRPVAKIDTYELVFASAVGERTELEVPGAANTYILSDLNP
GMLYTISLTAKRGRKMSAPATLSASTDDEKPQVGNITISDVSWDSFSVSWELDRGEVEGF
LIEVSDPDGLYDGQNHTLSSQKFSLAVTDLSPSTFYRVTLYGLYKGDLLDPVFAEAITEA
EPEVEHLLVSDITPHSFKLTWTAPEGVFDTFTLKVVDSNGLGKPHLISVSGDKRTEEVTG
LNEDMEYEIELFGIILGRKFQPILAVARTGLGTPKGIRFSDVTDTSATVHWTMPRTHVDS
YRVTYVPVQGGSPMTLRVDGGESQAMLPNLTPGVTYQVTVIAVKGLEESEPGSDRVTTAL
DKPRGLTAVNITDTEALLLWQPSIATVDGYVITYSADSVAPVMERVSGNTVEFELSSLTP
ATLYTVKVYAVREAAKSAATTTEFTTDVDAPQNLAASNIQTETAMLTWKPPRADISGYIL
SFESADGMVKEVVLSPTATYYSMSQLTASTEYTVKLQAIAGPKRSRIISAVFTTIGVLYK
HPKDCSQALLNGDTASGLYTIYVRGDESQPLQVYCDMTTDGGGWIVFVRRQSGKVEFFRN
WKNYTAGFGDLNDEFWLGLSNLHKITSSGQYELRVDLRDKGESAYAQYDKFSVSEPRSRY
KVHVGGYSGTAGDSMTYHHSRPFSTYDHDNDIAVTNCALSYKGAFWYKNCHRVNIMGRYG
DNSHSKGVNWFHWKGHEHSVEFAEMKIRPANFRNFEGRRKRS
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atggggatgcgaggtctgctactggcctctgtggcagtagccgttttagttcatctctct
agtgctggcctggttaaaagagtaattagacacagaagagaatcactgtcaccaaccact
gagaacttgaccctcccaagtcctgaccagcctgtggttttcaaccatgtgtacaacatc
aacgttcccactggatccatgtgctcggtggacatggattcaccaggaacaaccgaaatt
aagccaaaatcggaacaatctgaccagcacatagaacacaccatggatggggagaatcag
atcgttttcacgcataggattaacattcccaagcaagcttgtggttgtgataaccacatg
cctgacctgaaggaccttctgaacagactggaaatgctggaagcagaggtatccagtcta
agggagcagtgcaccagtggaacaagctgctgtagtgctcaggttacaggtgaagtcaca
accaaaccctactgcagtggccgtggcaactacagcactgagacctgcagctgtttgtgt
gagcccggttggaagggagtcaactgctctgagccagagtgcccgaacttctgccaggat
caaggccgttgcgaggatggcaagtgtatctgcttcgagggctttggtggggaggactgc
agtattgagctgtgtcctgtagattgcggtgagaatggcgattgcatcgacggggcttgc
ctctgcgaggagggcttcatcggtgaagactgcagtttaaccaactgcctaaacaactgc
cttggcagggggcgctgtgtggatgacgaatgtgtatgcgacgagccttggacggggttt
gactgctctgagctcatctgtcctaatgactgctttgaccgtggccgctgtgacaacgga
acctgctattgtgatgagggctttactggggaggactgtggggagcttacctgccccaaa
aactgcaaccaccgtggcaggtgtgtcaatggacagtgtgtctgcaatattgggtacagc
ggagatgactgctccaagctcacctgtctcaatgactgcaatcagagaggtcactgtttc
aatgggaagtgcatatgtgaccccgggttcgagggcgaggactgcagcattctctcctgc
cccgacaactgcaatgaccgaggacagtgcgtcgatggtgagtgtatttgtgatgctgga
tatgaaggtgatgactgctcagagctttcctgccccaataactgtcacgatcgtggtcga
tgcgtcaacgggaagtgcatttgcaaagtgggctttgctggagaagactgcaacatcaag
acttgtcccaatgactgccatggacgaggagagtgcatagatggcaagtgcatttgccat
gatggctttgctggagaacattgcggtgtcaagacctgccctcatcactgccatggacgt
ggacagtgtgtggacggcaagtgtgtttgccacaatggctttgctggagaagactgcagc
atcaaaacctgtcccaatcattgccatggacgtggacagtgtgtggatggcaagtgtgtt
tgccacaatggctttgctggagaagactgcagcatcaaaacctgtcccaatcattgccat
gaacgtggacagtgtgtggatggcaagtgtgtttgccacaatggctttgctggagaagac
tgcagcatcaaaacctgtcccaatcattgccatgaacgtggacagtgtgtagatggcaag
tgtatttgccatgatggttttgctggggaagactgcagtatcaagacctgccccaatgac
tgcaatgaccatggacagtgtgtggacggcaagtgtgtttgccacactggctttacaggc
catgactgcagcgagttgacttgccccagtgactgccataaccaaggacattgtgtaaat
ggccagtgcgtgtgtaacagcgggttcactggggaggactgtggtacaaagatgtgtcct
aacaactgtttggaccgtggcttctgtgaagatggaaaatgcatctgctttgaaggctac
actggtgtggattgctctgttctgacctgcccagaaaactgcaatgaccaaggccaatgc
ctgaatggaatgtgcatatgtgatttaggcttcactggcgacgactgctctgaaatctcc
ccacccagagaccttacagtgactatagtcgacccagaaacagtggacctcacctgggtc
aatgagatgcttgtgacagagtatcttatcacctatgtgcctacggctcctgggggttta
gaaatggaaatgaaagtctctggtgaaaagaagacagccactattagggagctcgagcct
ggcatagagtacctaatcagtgtctttgctgtcctgaacagcaagatgagtgttcctgtc
agtgccagaatcgccacacatctccctgaacctgatggtctgaaattcaaatcggttaga
gagacttcagtagaggttgagtgggaccccttgaacatcccgtttgatagctggaacctc
atcttcagaaacacaaaagaagaggatggagagattttgaactctctcacacctcctgag
accacctttgagcagtctggtcttggacctggacaagagtatgaagttaagcttgaggtc
gtaaagaacaacacccgtggacacccatccagcaagaacgttgtcacaatgattgatgcc
cccagccaagtggatatgcgtgatgtgacggacactacagccctcgtcacctggtttcag
cctgttgctcaggtggatgggatctctgtgtcctatggcccaaacacagattcctcagac
aggaacacagtcaagctttcctcaatggatacccagtatcatctggctgagctgtatccg
gacactgagtatgaggtctctcttatggcccacaggggagagatgaccagctttcccgtc
tatgagaccttcaccacagacctggatgccccaaagcagctcaaggctgttgaacagaca
gatgagagtataactctggagtggaaaaacagcagagccaacatcctgaattaccgtgtt
aaatacggcccactttctggaggggagcatggagaactggtcttccccagcggcccgcaa
gacaccactcaggctaaaatcactggccttaggcccgggaccgagtatggaatgggagtg
acgtccattaaggaagagcgtgagagtttgcctgcaacgaccaatgctgttactgatctt
gatgctcccaaagagcttcaagtaagtgagaccacagagaccacactgacacttgtttgg
aggaggccggtcgccaaaatcgacacctatgagctagtgtttgcatctgcggtcggcgag
agaactgaattggaggtacctggtgctgccaatacctacatcctgagtgatctgaaccct
ggcatgctgtacaccatcagcctgactgccaagagaggaagaaagatgagtgcgccagcc
accttgtcagcatccacagatgatgagaagcctcaggtgggaaacatcaccatctctgat
gtgtcctgggacagcttcagtgtgtcctgggagctggacagaggagaggttgagggcttt
ctgattgaagtgtctgacccagatggcttatatgatggccagaaccacacattatccagt
cagaagttcagcctggctgtcactgacctctcccctagtactttctacagggtcacactg
tatgggctgtacaagggagatctcttagatcctgtctttgctgaagccatcacagaagct
gaacctgaagtggagcaccttttggtctcggacatcacaccgcacagctttaaactgaca
tggacagcaccggagggcgtctttgatacattcaccctcaaagtcgtcgattctaatgga
ctgggcaaaccccacctgattagtgtatctggagacaagcgaacagaagaagtgacaggt
ctcaatgaagatatggagtatgaaattgagctgtttgggatcattttgggacggaaattc
cagcccattttggctgtagctcgaacaggcctaggtacacccaaggggatacgcttttct
gatgtgaccgatacatcggctactgttcactggactatgccccgtacccatgtagacagc
taccgggtcacctatgtacccgttcagggtggcagccctatgacactgagagtagatggt
ggagagtctcaagccatgctgcctaatctgacccctggagtgacctaccaggtcactgtt
atcgctgtgaagggcttggaggagagtgaaccaggatctgacagggtcacaacagccctg
gataaaccacgcggtctgacagcagtcaacatcactgacaccgaagccctgctgctgtgg
cagccgtccatcgctactgttgacggatatgtcatcacttacagcgcagacagtgtggct
ccagtgatggaaagggtgtctgggaacactgtggagtttgagctgagctccctcacaccc
gccaccttatacaccgttaaagtctatgcagtccgagaggcagccaagagtgctgcaacc
acaacagagttcaccacagatgttgatgcccctcagaatctggctgccagtaatattcaa
acagagactgccatgttgacatggaagccaccaagagcagacatcagcgggtatatcctc
agctttgagtcggctgatggcatggtcaaggaggttgtcctaagccccacagcaacgtat
tacagcatgtctcagctgactgcctccacagaatacacagtcaaactgcaggccatcgct
gggccaaagagaagcagaatcatttctgcagtcttcaccaccattggagtgctgtacaag
catcctaaagactgctcgcaggctctgttgaatggagacacagcctcaggcttgtacact
atttatgtgcgtggagatgagagtcagcccctgcaggtctactgcgatatgaccactgat
ggaggcggctggattgtgtttgtgagacggcagagtggtaaagtggagtttttcagaaac
tggaagaactacactgcaggctttggtgacctgaatgatgaattctggctgggtctctct
aacctccacaagatcacctcctctgggcagtatgagctgcgtgtggacctcagagataag
ggagagtctgcatatgcacagtatgacaagttttcagtctctgaaccacgcagtcgctac
aaagtccatgttggaggatacagtggcactgcaggtgactcaatgacgtaccaccacagc
cgtccattctcaacttacgatcatgacaacgatatagctgtcaccaactgtgcgttgtct
tataagggagctttctggtataaaaactgtcatcgagtcaatataatgggccgatacgga
gacaacagtcacagcaagggtgtaaactggttccactggaagggtcatgagcactccgtc
gagtttgcagagatgaagatcaggcccgccaacttcaggaactttgagggaaggagaaag
cgatcataa
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integrated database retrieval system
