Squalius cephalus (European chub): 307159432
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Entry
307159432 CDS
T11930
Symbol
tia1
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1 isoform 1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
scep
Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scep03019
]
307159432 (tia1)
03041 Spliceosome [BR:
scep03041
]
307159432 (tia1)
Messenger RNA biogenesis [BR:
scep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
307159432 (tia1)
Spliceosome [BR:
scep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
307159432 (tia1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
Calcipressin
RRM_Nup35
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
307159432
NCBI-ProteinID:
XP_079728943
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All DBs
Position
5:10554202..10563015
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AA seq
407 aa
AA seq
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MMDDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDHLDTSRGVNPHLPHDSVM
IPRTAGNDPYCFVEFFEHRHAAASLAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVF
VGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG
QWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQL
MRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTSLEGHLVKCYWGKETTD
MVTPMQQVQVPQQNKVGFAAQPYGQWGQWYGNAQQISQYVPNGWQVPTYGVYGQAWNQQG
FNHLQAGAGWTGVSAVSNGGVVEPAQGVNGTVLANQSSMGTAGYHTH
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgacgagcagcccaagaccctgtatgttggaaacctgtcacgggatgtgacc
gaggcccttattatgcagctctttggtcaaattggcccctgtaagagctgtaaaatgatt
gtggatcatctcgatactagtagaggtgtgaatcctcacttgcctcatgattcggttatg
attccaaggacggcaggtaacgatccatactgctttgtggagttcttcgagcataggcac
gcagcggcctcactcgcagccatgaatgggcgtaaaataatgggtaaggaggtaaaggtg
aactgggccacatcaccaagcagccagaaaaaagacacaagcaatcacttccacgtcttt
gttggagacctcagtccagaaatcaccactgatgatatcagagctgcctttgcacccttt
gggaggatatcagatgcacgtgtagtgaaagacatggcgacggggaagtcaaaaggctat
ggttttgtttcattcttcaacaaatgggatgcagagaatgccattcagcagatgggaggt
cagtggttgggtggtaggcagatcaggactaactgggctacaagaaaacccccagcgcct
aaagccacctatgaaacaaacacaaagcacttgtcgttcgatgaggtagtgaaccagtcc
agccccagcaactgcacagtttattgtggtggagtcactacaggccttacagaacaactc
atgagacagaccttttccccctttggccaaataatggaaattagagtgttcccagacaaa
ggctactcattcgtgaggttcaactctcatgaaagtgcagctcatgcgatagtgtctgtt
aatggcacatccttagaaggtcatctagtgaaatgttactggggtaaagagactacggac
atggtgacccccatgcagcaggtgcaggtaccccagcagaacaaagttggtttcgccgca
cagccatacggccagtggggacagtggtacggcaacgcacaacaaattagtcagtatgtc
cctaacggctggcaggtacctacttacggcgtgtacggacaggcttggaaccaacagggc
ttcaatcacttacaggctggcgctgggtggactggtgtgagtgccgtgagtaacggaggc
gtggtggagcctgcgcagggagtcaatggaaccgtgctagccaaccagtccagcatgggc
actgcaggataccacacacactga
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