Squalius cephalus (European chub): 307159475
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Entry
307159475 CDS
T11930
Symbol
ungb
Name
(RefSeq) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
scep Squalius cephalus (European chub)
Pathway
scep03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
307159475 (ungb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scep03400
]
307159475 (ungb)
Enzymes [BR:
scep01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
307159475 (ungb)
DNA repair and recombination proteins [BR:
scep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
307159475 (ungb)
Prokaryotic type
307159475 (ungb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
307159475
NCBI-ProteinID:
XP_079729007
LinkDB
All DBs
Position
5:complement(31867516..31871906)
Genome browser
AA seq
264 aa
AA seq
DB search
MSKASCREQVSGENMQLSEEQLHQIEQNRRAALERLASRNVPGPVGESWRRQIGTEFTKP
YFTKLMSFVTMERKCFTVYPSPEQVFYCTTLCAIEDVKVVILGQDPYHHPGQAHGLGFSV
LRPKPPPPSLENIFKELTEDIVGFQHPGHGDLTEWAKQGVLLLNSVLTVRAQQPTSHEGQ
GWERFTDAVVLWLSRNLNGLVFLLWGSYAQRKGRVIDRKRHHVLETSHPSPYSAHLGFFG
CRHFSKTNMLLKATGKNPIDWTAL
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagcatcctgcagagagcaagttagtggtgagaacatgcagctgagtgaggag
cagctgcatcagatagagcagaacagacgcgccgcactggaacgactggccagccgaaat
gtacctggacctgttggtgaaagctggcgaagacaaattgggactgaatttacaaaacct
tattttacaaaactaatgtcttttgttacaatggagaggaaatgctttactgtctatccc
agccctgagcaggtgttttattgcacaactttgtgcgcaattgaagatgtaaaagtggtc
attcttgggcaagacccctatcaccatccaggtcaagcccatggtttgggcttcagtgtg
ctgaggcctaaacctcctcctcctagtttggaaaacatatttaaggagctgacagaagat
attgttggtttccagcacccaggtcatggagacctcacagaatgggctaaacagggtgtt
ctgctgcttaattctgtgttgacagtgagggctcaacaacccacctctcatgagggtcaa
ggctgggagcgcttcacagatgctgtggtcctgtggctcagcaggaacctcaatggcctg
gtctttctgctttggggctcgtatgctcagaggaaaggcagagtgattgacagaaaacgt
catcatgtccttgagacttcacatccatcaccatactctgcacatttaggcttctttgga
tgtaggcacttttctaaaactaacatgctacttaaagcaacaggaaagaatccgattgat
tggacagctctctga
DBGET
integrated database retrieval system
