Squalius cephalus (European chub): 307160836
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Entry
307160836 CDS
T11930
Symbol
lrrc4ba
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
scep Squalius cephalus (European chub)
Pathway
scep04514
Cell adhesion molecule (CAM) interaction
scep04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
307160836 (lrrc4ba)
04517 IgSF CAM signaling
307160836 (lrrc4ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scep04515
]
307160836 (lrrc4ba)
Cell adhesion molecules [BR:
scep04515
]
Immunoglobulin superfamily
NGL family
307160836 (lrrc4ba)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_9
ig
LRR_14
V-set
LRRNT
Ig_2
VEGFR1-3_N_Ig-like
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
307160836
NCBI-ProteinID:
XP_079731243
LinkDB
All DBs
Position
1:40528344..40563307
Genome browser
AA seq
732 aa
AA seq
DB search
MRITTVTSLPSPSPLLLLLVHLLLRLILPGQDAVGAASTCPTPCSCSNQASRVICTRRNL
EEVPDSISNNTRYLNLQENSIQVIKSDTFKHLRHLEILQLSKNQIRQIEVGAFNGLPNLN
TLELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDY
ISDAAFVGLINLRYLNLGMCGLKDIPNLTPLVRLEELELSGNRLEIIRPGSFQGLESLRK
LWLMHSQMSVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLQKLERVHLNHNPWVCNC
DVLWLSWWLKETVPSNTTCCARCHAPPYLKGKYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTGTSMTSVNWITPNGTLMTHGSYRVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNSAGNTTATAVLNVTAADVSVNYTYFTTVTVETVENTGDEESALRAINETIIHIPGTT
PSGHLWDKVVTTTASSLSILGSSSSPRATKPTFTVPISEPSYPSGLDDVMKTTKIIIGCF
VAITFMAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDEIGAGTGIRGSGISGGSTVP
QGGSGGQSLRLHHPEIVNLPNLARAEHLNHYYKAHHFNNNMMGLGLGGGSGGGLNNNNNP
SPCSQAQNIPISCTQVPVSAGSTSCSMPSSMPLPTLGIHGSLKGLMSKGQNPQIEPLLFK
SGSKENVQETQI
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcaccacggtgaccagccttcctagtccctcccccctcctcctcttattggtt
catctgctgttgcggctcatcctcccaggccaagacgcagtcggagccgcctccacctgt
cccacgccgtgcagttgttctaatcaagccagtcgagtgatctgtacaagacgaaactta
gaagaggtgccagacagtatatccaacaacacacgatacctcaacttacaggagaactcg
atacaggtgataaaatcagacacattcaaacatttgcggcacctggagatcctccagctc
tccaagaaccagattcgtcaaatagaggtgggtgctttcaatggcctcccaaacctcaac
actctggaactgttcgacaaccgcctcacactggtgccatcgcaagcctttgagtacctc
agtaagctgcgagaactgtggttacgaaacaatccaatcgagaccttaccaggctatgcc
tttcatcgcgtcccctcgctgcgacgtcttgacctaggcgaactcaaaaagctggattat
atatctgacgcagcctttgttggactcatcaacctgcgctacctgaacttgggtatgtgt
ggcctgaaggacatccctaacttaactcccctggtgcgactggaggagctagagttgtct
gggaaccgtctggaaatcatcagacctggatccttccaaggcctggaatctttacgcaaa
ctatggctcatgcattctcagatgtcagtcatcgagcgcaatgctttcgatgatctcaag
aacctagaggagctcaacctatcccacaattccctacactctttgccccatgaccttttc
acacccttgcagaagcttgagcgagttcatctcaatcacaacccttgggtgtgcaactgt
gacgtgctgtggctaagctggtggctgaaagaaaccgtgccgagcaacacaacctgctgt
gcacggtgccatgcaccaccctacctaaagggaaagtacattggagagctggaccagagc
catttcacctgctatgcccccgtcattgtggagccgcccactgacctcaatgtgacagag
ggcatggctgctgagctcaagtgtcgcaccggtacctccatgacttctgtgaactggatc
acaccgaatggcaccctaatgacccatggctcctatcgggtcaggatttccgtgctgcat
gatggcacactgaatttcaccaatgtaactctgcgcgacactggccaatacacctgcatg
gtgaccaactcagctgggaacactacggcaactgccgtcctgaatgtgaccgcagcagac
gttagcgtcaactacacctacttcaccacggtcactgtagaaactgtggagaatacgggg
gatgaagaatctgcattgcgtgccatcaacgagaccattatccacattcctgggacgaca
ccttctgggcacctctgggataaagttgtcaccactactgcctcttctctctcaatcctt
ggctcatcgtcttctccccgagcaaccaaacccactttcacagtccccatttctgagccc
agctacccctccggactagacgatgtcatgaagaccaccaaaatcatcattggttgcttt
gtggccattaccttcatggccgctgtcatgctggtggtgttctacaagctgcggaagcag
caccagttgcacaaacaccacgggccggcacgagccatcgagatcattaacgtcgaagat
gagatcggagcgggaacgggcatccgtggcagcggcatctcaggaggatccacagtaccg
caaggagggtccggcggacagagcttgcgactgcaccaccctgaaatcgtcaacctccca
aaccttgcacgagcagagcatctcaaccattactacaaggcccatcacttcaacaataac
atgatgggtctgggccttggtggaggctcgggcggaggcctaaacaataacaacaaccct
tcgccctgctcccaggcccagaatatccccatctcttgcacacaggtgccagtctctgca
ggtagtacatcatgctccatgccttcttcaatgcctctgccgacccttggcatccacggg
tcactgaaaggcctgatgagtaaagggcagaacccacagatcgagccgttactattcaag
agcggctccaaggagaatgtccaagaaacccagatctga
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