Squalius cephalus (European chub): 307160954
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Entry
307160954 CDS
T11930
Symbol
itgb1b
Name
(RefSeq) integrin beta-1b isoform 1
KO
K05719
integrin beta 1
Organism
scep Squalius cephalus (European chub)
Pathway
scep04145
Phagocytosis
scep04510
Focal adhesion
scep04512
ECM-receptor interaction
scep04514
Cell adhesion molecule (CAM) interaction
scep04517
IgSF CAM signaling
scep04518
Integrin signaling
scep04530
Tight junction
scep04810
Regulation of actin cytoskeleton
scep04820
Cytoskeleton in muscle cells
scep05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
307160954 (itgb1b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
307160954 (itgb1b)
04514 Cell adhesion molecule (CAM) interaction
307160954 (itgb1b)
04517 IgSF CAM signaling
307160954 (itgb1b)
04518 Integrin signaling
307160954 (itgb1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
307160954 (itgb1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
307160954 (itgb1b)
04530 Tight junction
307160954 (itgb1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
307160954 (itgb1b)
04810 Regulation of actin cytoskeleton
307160954 (itgb1b)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
307160954 (itgb1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scep04131
]
307160954 (itgb1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scep04147
]
307160954 (itgb1b)
04515 Cell adhesion molecules [BR:
scep04515
]
307160954 (itgb1b)
04090 CD molecules [BR:
scep04090
]
307160954 (itgb1b)
Membrane trafficking [BR:
scep04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
307160954 (itgb1b)
Exosome [BR:
scep04147
]
Exosomal proteins
Proteins found in most exosomes
307160954 (itgb1b)
Cell adhesion molecules [BR:
scep04515
]
Integrins
Integrin beta subunits
307160954 (itgb1b)
CD molecules [BR:
scep04090
]
Proteins
307160954 (itgb1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
I-EGF_1
PSI_integrin
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
307160954
NCBI-ProteinID:
XP_079731474
LinkDB
All DBs
Position
7:37796414..37834873
Genome browser
AA seq
799 aa
AA seq
DB search
MDVRLLLISVLLGLSRAQQDGNECTKASAQSCGECIQAGEKCGWCTDESFLKQGEQKSTR
CDEIDALIKKGCSNASIENPRGGVTVDKNKPVTNRTKDGVKLKPDQITQIQPQKLTLDLR
SGEAQTFSLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKNLGTHLMKKMQTITSDFRIGF
GSFVEKTVMPYISTTPAKLLNPCTSDQNCTSPFSYKNVLSLTEDGSQFNTLVSRQQISGN
LDSPEGGFDAIMQVAVCANQIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGKCHLQ
NDMYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYQELKNLIPKSAVGTLTSDS
NNVIDLIIDAYNSLSSEVILENSRLPDGVSISYISHCKDGVIEKGENGRKCSNISIGDEV
KFEVAITAKGCPSNGKSETIKIKPLGFTEEVEIVLNFICECECHKDGIPNSPSCHFGNGT
LECGACRCNDGRIGRNCECSKDEVRTEDLDANCRMDNGTDICSNNGDCVCGTCECKKRDN
PEERYSGKFCECDNFNCDRSNNKLCGGHGRCECRKCICDANYTGSACDCSLDTSTCLASN
KQICNGRGTCECGVCKCTDSKFQGQTCEICPTCPGVCTEHKDCVQCRAFATGDKKDTCEK
ECMGFHLIVVKMKNDLPQPHDQPYINHCKERDANDCWFFFSYATKNDSTVEVHVAEELEC
PSGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTQENPIY
KSPINKFQNPSYGNKGVTL
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgaggctgctcctgatttcagttcttcttggactcagcagggcacaacaagat
ggtaacgaatgcaccaaggcctcggcccagtcctgtggcgaatgcattcaggccggagaa
aagtgcggctggtgtacagacgagagctttctgaaacagggtgagcagaaatccacacgc
tgtgatgagattgatgctctgattaagaagggctgttctaatgccagcatagaaaatcct
cgggggggcgttacagtcgacaaaaacaaacctgtaacaaaccgcacaaaggatggagtg
aaactgaagccagaccagatcacccagattcagccacagaaactcaccctagacctccga
tcaggtgaagctcagacattctctctgaaattcaagagggctgaggattatcccatagat
ctctactacctgatggatctcagctactctatgaaagacgatttggagaatgtcaaaaac
ctgggaacccacctgatgaaaaaaatgcaaacaatcacatctgacttcaggattggattt
ggctcttttgtggagaaaactgtcatgccgtacatcagcacgacaccagccaagctgctg
aacccctgtacatcagaccagaactgcaccagtccgttcagctataaaaatgtgctgagt
ttgactgaggacggatctcagtttaatacccttgtcagcagacagcagatctcaggaaac
ctggactcaccagagggagggttcgatgccatcatgcaagtggctgtctgcgcgaatcag
attggctggaggaatgttacccgtctgcttgtgttttccacggatgctggatttcacttt
gctggagacggaaaactgggcggcatcgtgcttcctaatgatgggaaatgtcatctgcag
aatgacatgtacaccatgagccattactatgactatccatctattgcacatctcgttcaa
aaattaagcgaaaacaacattcagaccatttttgcagtaactgaagagttccagcctgtt
taccaggagctgaaaaacctcattccaaagtcagctgtgggcacgctaacctccgactcc
aacaatgtgattgacctcattattgatgcatataattctctgtcctctgaggtcattctg
gagaacagcaggctgcccgatggtgtgtccatctcctacatctcccactgcaaggatgga
gtgattgaaaagggagaaaatgggaggaagtgctccaacatctccattggggatgaggtg
aagtttgaggtagcgatcacggctaaaggttgtccatctaatggtaagtcagagacgata
aagatcaaaccgctgggcttcactgaggaggtggagatcgtcctcaacttcatctgtgaa
tgtgagtgtcacaaagatggaatcccaaacagcccatcgtgtcacttcggcaacggtacc
ctggagtgtggagcatgcaggtgcaatgatggacgtatcggcaggaattgtgaatgtagc
aaagacgaggtgagaacagaagatctagacgcaaactgccgcatggataacggcaccgac
atctgcagcaacaatggagactgcgtttgtggaacgtgcgagtgcaaaaaaagagacaac
ccagaggagagatacagcggaaagttctgcgagtgcgacaacttcaactgcgaccgatcc
aacaacaagctctgtggaggtcacggtcgttgtgaatgccgaaagtgtatttgtgacgct
aactacaccggtagtgcgtgcgactgttctctggacacctccacctgtctggccagtaac
aaacagatctgtaacggccggggcacctgcgagtgtggcgtgtgtaaatgtacagactca
aagtttcagggtcagacctgtgaaatctgcccaacctgccctggagtttgtactgagcac
aaggattgcgtccagtgccgagcgtttgctactggtgacaagaaagacacgtgtgagaaa
gaatgcatgggcttccaccttatagtagtaaagatgaagaatgatcttcctcagccccac
gaccagccctacatcaatcactgcaaagagcgcgatgctaatgactgctggttcttcttc
tcctacgctaccaagaacgacagcaccgttgaggtccacgtggccgaggaacttgagtgt
ccctctggccctgacatcatccccatcgtagcgggtgtggtcgcagggattgttctgatt
ggtttagcgcttctgctcatctggaagctgctcatgattattcacgatcgcagagagttc
gccaagttcgagaaagagaagatgaatgccaagtgggacacgcaagagaaccccatttac
aagagccccattaataagttccagaatccaagttatggaaataagggcgtcacactctga
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integrated database retrieval system
