Squalius cephalus (European chub): 307161455
Help
Entry
307161455 CDS
T11930
Symbol
tnn
Name
(RefSeq) tenascin-N isoform 1
KO
K06252
tenascin
Organism
scep Squalius cephalus (European chub)
Pathway
scep04510
Focal adhesion
scep04512
ECM-receptor interaction
scep04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
307161455 (tnn)
04518 Integrin signaling
307161455 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
307161455 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
scep00536
]
307161455 (tnn)
Glycosaminoglycan binding proteins [BR:
scep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
307161455 (tnn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Fn3_PBP1
Fn3_Dep-1_3rd
EGF_2
FN3_DSCAM-DSCAML_C
EGF_Tenascin
Interfer-bind
SdrD_B
Fn3_Dep-1_2nd
EGF
DUF7949
EGF_PEAR1L
hEGF
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
307161455
NCBI-ProteinID:
XP_079732296
LinkDB
All DBs
Position
7:complement(32639753..32673150)
Genome browser
AA seq
1020 aa
AA seq
DB search
MIVRFNRLKRGLFLLGTLFTLSQLVLSEEVLPAEKELTFSHVYRIDSGCKQSSQMGQLSQ
DQASEGQLVTVDGENDIVFKHNIRLQPAGCGCADSEDFKALLYRVNGLEEEVTYLKGQCA
QSCCRGGSGVDTSCSGHGTYQHDSCSCKCNPGWEGPDCSISSCPDECNDNGRCVDGRCVC
YEGYTGQDCSQLTCPNDCKDKGHCVDGKCVCFSGFSGDDCSVATCPNDCIGNGRCVDGQC
ICDEGFFGIDCSTVLGPKGLRLIKVTDVSLLVEWESVRGAEYYILSYYPKGDEGAIKEVQ
VENTKNSYLITGLRPGVTYIVQVYAVIRGINSDSDEIVATTEVSGIEGIKVVGQTEDSIQ
VDWKNPAIAVDYFKLTHSSPDGQGGQENVAMSQEAKTMHTIVGLNPGTEYQIGVQVIKGE
IESKPSYTTGVTDIDAPTNLATREVTENSATVTWDGVRAEIDGYTLTYSSAEGTSREIKV
GADATSYQLTSLKPGVLYTVFLWAYKGSRSSRKSMTEAETDIDAPTNLMTKEVTEDSASV
TWDRVQADIDGYMLSYSSIDGFGQEVRVGADSTSYSFTGLKPGVLYTVYVWAIKGPRSSK
KSSTEALTDIDAPTNLLTREVTEDSASVTWDRVQADIDGYMLSYSSIDGFGQEVRVGADS
TSYSFTGLKPGVLYTVYVWAVKGSRSSRKATTEAETEIDAPKNLKAIDVQTETSTITWKA
PQANIDGYILTYRAEDGSMQTLEKTLTARDNRFDLSGLAMGKKYIVTLIAYRGSKRSRVV
ETIFSTVGVAYPFPMDCTQIMRNGNMESGIYTIFINSNRSRTMQVYCDMTTDGGGWIVFQ
RRNSGKLDFMKRWRDYMKGFGELKDEFWLGLEKIHELTNTATQYEVRFDLGVGSERKYAV
YDNFKLAPSKQKFKLTIGNYKGNAGDAMTYHQGGSFSTVDSDNDIALGNCALTHQGAWWY
KNCHLANLNGRFGDNRHSMGVNWEPWKGHLQSLDFAEIKIRPVGAAGRQKRSLKRRVAVY
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgattgttagattcaaccggctgaagagaggtctctttcttctggggacgctttttacc
ttgtcccaacttgtgctgtccgaggaggtgcttccagcagagaaagaactcacattcagc
catgtctataggattgactctggttgtaagcagagttctcaaatgggacaactttcccag
gaccaggcctcagaaggacagttagtcacagtggatggagagaatgacattgtcttcaag
cacaacatacggctacagccggctggttgtggatgtgctgactctgaggatttcaaagcc
ctgttgtaccgtgtaaatggcctggaggaggaggtcacgtacctaaaaggccaatgcgct
cagagctgctgcagaggagggtcaggtgtggacaccagctgcagtgggcatggcacgtac
caacatgactcttgcagttgtaagtgtaacccaggctgggagggtccagactgctccatc
tcatcctgccctgatgaatgcaatgataatggccgctgtgttgacggacgctgcgtctgc
tatgaaggctacaccggccaggactgcagccagctcacgtgccccaacgactgcaaagat
aaaggccactgtgtggatggcaaatgtgtgtgctttagtggattctcaggagatgactgc
agtgtcgcgacctgtccgaatgactgcataggtaatggacgctgcgtggatggacagtgc
atctgcgatgagggattctttggaatcgactgctccacggttctaggaccaaaaggcctc
cgtctgatcaaagtcacagatgtatctctgctggtggagtgggagtctgtaagaggagct
gagtactatatcctgtcctactatccaaagggagacgagggagccattaaagaggtccag
gtggaaaacacgaaaaactcctacctaatcacaggactcagacccggagtcacgtacata
gtgcaggtgtacgctgtcatcaggggcattaacagtgattctgatgagatagtggctaca
accgaggtctctggtattgaaggaataaaggtggtgggccagacagaggactccatccag
gtggactggaagaaccctgcgatcgctgtggactacttcaaattgactcattctagccct
gatggtcagggaggacaggagaacgtggcaatgagccaggaggccaaaaccatgcacacc
attgtaggcctcaacccaggaacagaatatcagataggtgtacaagtgatcaaaggtgaa
attgaaagcaagccatcgtataccacaggggtcacagacattgatgccccaaccaatctg
gcaaccagagaggtgacagagaactccgcaactgtgacgtgggatggtgttcgtgctgag
attgatggctacacgctgacttacagctctgcagagggcaccagccgagaaattaaagtg
ggagcggacgctacgtcttaccagctgacctctctgaagccaggagtcctgtacacagtg
ttcctctgggcctataagggctctcgttccagtaggaagagcatgactgaggccgagacg
gacatagatgctcctactaaccttatgaccaaggaggtgacagaggactcggcgtcggtg
acgtgggacagggtgcaggctgacattgatggctacatgctgagctacagctctatagat
ggcttcggtcaggaggttcgagtaggagctgacagcacctcctacagtttcactggtctg
aagcctggagttctctacacagtctatgtgtgggccatcaagggccctcgctctagcaaa
aagagctcaacagaagcattaacagatatagacgctcctactaacctcttaacccgagag
gtgacagaggactcggcgtcggtgacgtgggacagggtgcaggctgacattgatggctac
atgctgagctacagctctatagatggcttcggtcaggaggttcgagtaggagctgacagc
acctcctacagtttcactggtctgaagcctggagttctctacacagtctatgtctgggct
gtgaaaggctctcgctcaagcagaaaagccacaacagaagctgaaacagagattgatgca
cccaagaatctcaaagccattgatgttcagactgaaacctccactattacatggaaagct
cctcaggctaatattgatggctacatcctgacctacagggctgaggatggcagtatgcag
actttggaaaaaactttgactgcgcgggacaatagatttgatctttctggccttgcaatg
ggaaaaaagtacattgtcacccttattgcctacaggggctcgaagaggagtagggtagtg
gagacaatatttagtacagtgggtgtggcctacccgttcccaatggactgcactcagatt
atgaggaatggaaacatggagagtggcatctacacaatcttcatcaatagcaaccgtagc
agaaccatgcaggtgtactgtgacatgacgactgatggtggcggctggattgtgttccag
agacgaaacagcggcaaattagatttcatgaagcgctggagagactatatgaaaggcttt
ggagaactgaaagatgaattttggcttggcttggagaagatccatgagctgactaatact
gctacacagtatgaggtgcgtttcgatttgggcgtgggatcagagcggaaatatgccgtc
tacgataatttcaaattagcaccatccaaacagaagtttaaacttaccattggcaactac
aaaggaaacgctggtgatgccatgacctaccaccagggaggatctttctccacagttgat
tcagacaatgacattgcgcttggtaactgtgctctgactcaccaaggtgcctggtggtac
aagaactgccacctggccaatctgaacggcagatttggggataacagacacagtatggga
gtaaactgggagccatggaaggggcacctgcagtctcttgactttgccgaaattaagatc
cgcccagtgggcgcagcgggcagacagaagaggtcactgaagaggagggtagctgtgtat
taa
DBGET
integrated database retrieval system
