Squalius cephalus (European chub): 307162320
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Entry
307162320 CDS
T11930
Symbol
irf4a
Name
(RefSeq) interferon regulatory factor 4a
KO
K09445
interferon regulatory factor 4
Organism
scep Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scep03000
]
307162320 (irf4a)
Transcription factors [BR:
scep03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
307162320 (irf4a)
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Ortholog
Paralog
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
307162320
NCBI-ProteinID:
XP_079733687
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All DBs
Position
7:complement(10500242..10513687)
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AA seq
461 aa
AA seq
DB search
MNLDGDCSMSVSCGNGKLRQWLIDQIDSGEYPGLVWENDEKSIFRIPWKHAGKQDYNRDE
DAALFKAWALFKGKYREGLDKPDPPTWKTRLRCALNKSNDFDELVERSQLDISDPYKVYR
IIPEGAKRGSKASSMEDNTAHVTPISYPMHSPYPPLQPQIPGYMLPQERRDWREYSADQP
HAQTPHAELPYGQCPYPSTRSLSWHASPCDNGYQISGSFYTYSPTETHPVAMDPSMRSAE
AMAISDCRLHVSLYYRESLVKEVTTSSPEGCRISSSSSPGSPSSPSSPCPEERLYGGAEP
VLFPFPYPQSQRRGAEKLPNILERGVLLWLAPDGLYAKRLCQGRVYWEGPLAPYADKPNK
LEKEQTCKLMDTQQFLSELQGFIHHGRPMPRSQVVLCFGDEFPDPQRQSKMITAQVEPMF
ARQLLYFAGQTNGHYLRGYELQSQGGLPVEEYQRSIQHLQE
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagatggggactgcagcatgtcagtcagttgtgggaatggcaaacttagacag
tggctcatcgatcagattgacagcggggagtatcccggcttggtttgggaaaatgacgag
aaaagtattttcaggattccctggaaacacgcggggaagcaggactacaatcgcgatgag
gacgcggcgctcttcaaggcatgggctctgttcaaaggcaaatacagggaaggcttggac
aaaccagaccctccaacatggaagacgagactccgctgtgccctgaacaaaagcaatgac
tttgatgaactggtggagcgaagccaattagacatatctgatccttacaaggtctacagg
atcataccagaaggagcaaagagaggctctaaggccagtagtatggaggacaacacggca
cacgtgactcctattagttatcccatgcattctccttatccacctctacagcctcagatc
ccaggatatatgctcccccaggagaggcgtgattggagggaatatagtgcagaccagcct
catgcccagacgcctcacgcggagttaccgtacggccagtgtccgtatccctcgactcgc
tccttatcctggcatgcatcgccctgtgacaacggataccagatatctggctccttctac
acctactcaccgacagaaacccatccagtggcaatggaccccagtatgagatccgctgaa
gccatggccatttcagactgtcgcctgcacgtctcgctgtactatcgggagtcacttgtg
aaggaagtgaccaccagcagccctgaaggttgtcgaatctcgtcctcctcgtccccggga
tccccttcgtccccttcttctccttgcccagaggaaaggctctatggtggggcagagccc
gtgctctttcccttcccataccctcagtcccagcggcgcggggccgagaagctgcccaac
atcttggagcgtggcgtcctgctgtggctggcgccggacgggctgtacgccaagcgcctg
tgccaaggcagggtgtattgggaaggtccactggcaccgtatgcagacaagccaaacaag
ctggagaaagagcagacctgcaagctgatggacacgcagcagttcctgtcagaattgcag
ggtttcattcaccacggccgccctatgccgcgctctcaggtggtgctgtgctttggagac
gagttcccggacccccagcggcagagcaaaatgatcacagctcaggtggagcccatgttt
gccaggcagctcctgtattttgcaggccagaccaacggtcactacttgcgcggatacgag
cttcagagtcaaggtggtttacctgtagaagagtatcagaggagcatccaacacttgcaa
gagtaa
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