Squalius cephalus (European chub): 307163291
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Entry
307163291 CDS
T11930
Symbol
ahdc1
Name
(RefSeq) transcription factor Gibbin isoform 1
KO
K22592
AT-hook DNA-binding motif-containing protein 1
Organism
scep Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
scep03036
]
307163291 (ahdc1)
Chromosome and associated proteins [BR:
scep03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
307163291 (ahdc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4683
Motif
Other DBs
NCBI-GeneID:
307163291
NCBI-ProteinID:
XP_079735456
LinkDB
All DBs
Position
8:complement(4337242..4363508)
Genome browser
AA seq
1397 aa
AA seq
DB search
MSRLSGRLRSGGVRLTCEALADKDCSDDEGPSLWEGDEEPVGTSVGPTDTTPASSLHYSF
YSPPSLANGLRNHEEQLQRRARRRRQTEYVEQGMHIQQNTQPHMHTPQHSQSSTHMQPHT
HIPMDTHMWMDTSMLTHKRTPTDTGSSLVEQDPSLIPEDLSLPSKTETRNVQVQSAPLLH
TTPPPKTPQSPPQYNPSSLPKEETELNSTCKPEMDCTTDPDQVCITGQSTVVTSVEAERK
YTLRSSGRPRFPCHLRKSSRLRRAAEENMFKRELDQQDEEEEENRDWRTEEIRPIEEHPQ
EVCAAASSFEVLPSPDISASVTPNHSLRTSEGEGIVTHHAVRGKRQGRYSGVRRIVVKVA
RIPVHMSRRQKSYKISSLEPVCAALHGEGVTTGEKPEGGVGGEPGANVSREPTALLRMKN
NGKSVMVMFPPGELPVILKRRRGRPPKQALPGQPDMHETRAGAASAAEPKKIRRRRTVKL
PSPQPSYVNDTNDVKVEYADVLSKLAFLNRQPPSTGRCSPPRCWTPTEPETFHIPPENPS
LSTLLHRLTGFRRRGGRAGCMGSRGGGAAGSSDSFKRSFSDFFETIGKKRKVPASEPGTP
RKRGKGVAGGISRAALGDSVQGEKVRKRRARKNGASKNCAGAQEHDWQNENSSWIGKGDR
DIHEKASSYQSPCSPRGSFQSSEASKGGMYHSPGMRGVCSGEESQGMFAGYFRSLLDSDD
SSDLLDISMSSPAGRQEGRKLTPGYEGGSPGAAHRWSPAFPKRSPKGAACLGEGAPLPSP
QTQGSSATKPSYSFSVSQTSPTPSFPKSPALLLSRSPSSPHPSGGFPQYPPSYSAGVPQG
GSIYPLPQQQQQQQRPSDCSFTYGTKTPSVPSAQCQMSYSNYQGSAKRNYSGYPGPPHSN
IQRGDSGATSPGGSYMSMTKSSPYSLSSSPPEGCRQYTSTAQWGYRQGGNNWGSDAYGTQ
QFHGYSDYGVAGTGSESKDILDISNYTPQKAKQRPCLDTLSESSSDSSHTGGGGGMSVVG
GPFRPRDVPMPEGQSSLSSLEKLMLDWNENSAGPSYNWSQNVLFQGGAKPGRGRRKKSET
HNEKEACSVPPGSPASPPMQGGPKRSATGGRQPRGSRGRGGYSPCQRDRPPPKTKSQKPS
TPSGSGHMSSGGLYQEALDYYSGDSSSLSPLSHAPESCEYPSPYSVHTSTPSSDERFAHV
FPPDSASVSPSLSNQSDALKQYPKPGPPSQTYGHAARTFSPTLSPTPRLLPQCGSAMSPH
RVPKEQFSQYDSPSYSGSPCWYGQGGSVAGSPQNYEEQRPPAVSLPSHKRDMSLMVSGMR
VTSHSSYPSPLQRGPSMSTCVSGTLDSSPQHDEMAYHGNLDNYAPVGHRYAPQTARGGVL
CQLLDQPSDEGFTVTSL
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtctgtcaggtcgcctgcgctctggaggtgttcgcttgacttgtgaggcactg
gctgacaaagactgcagtgatgatgagggcccctctctatgggagggggatgaagagcct
gtgggcacatctgtaggacccaccgataccactccagccagctcactacattacagcttt
tattcacctccctctttagctaatggtctgcggaaccatgaagagcaacttcaacgtagg
gcaaggagacgtcggcagacagaatatgtggagcaaggaatgcacattcagcaaaacaca
caaccacacatgcacactccccaacactcacagtcaagcacacacatgcagccgcataca
cacattccaatggatacacatatgtggatggacacaagcatgctaacacacaagcgcaca
cccacagacactggctcctcacttgtagagcaggacccctcccttattcccgaagacttg
tctttaccttcaaagactgaaacacgtaatgtacaagttcagtctgcccctttgttacat
accactcctcccccaaagactcctcagtcacctcctcagtacaacccttcctctttacct
aaggaggagacagaacttaactcaacatgtaagccagaaatggattgcaccactgaccca
gaccaagtttgtataacaggccaatccactgtcgtgacctctgtggaggctgaaaggaag
tacaccctacggagctctggccgaccacgtttcccctgccaccttcgaaaatcgtcccga
ttacgtagagctgctgaggaaaatatgttcaaaagggaattggaccaacaggatgaagaa
gaagaggagaatagagactggagaacggaggaaataaggccgatagaggagcatccccaa
gaggtgtgtgctgctgcctcatcatttgaggttttaccatcgccagatatatcagcaagt
gttacaccaaatcatagcttgaggacatcagaaggagagggcattgtcactcaccatgca
gttagagggaagcgacagggacgttattcaggtgtgagaaggattgtggttaaagtagcc
agaatacctgttcatatgagccgacgacagaaaagctacaagatttcatccctggagcca
gtgtgtgctgctctccatggagaaggggtcacaacaggagagaaacctgaggggggtgtc
ggaggtgagccaggagcaaatgtttccagagagccaaccgcacttctccgcatgaaaaac
aatggaaagagtgtgatggtaatgtttccaccgggagagcttcctgtaatcttgaagcgg
cgcaggggacgccccccaaaacaggcattaccaggacagcctgacatgcatgagaccaga
gcaggagcagccagtgcagcagagcccaaaaaaattcgaaggcggcgaacagtaaagcta
ccatctccacagccctcatatgttaacgacaccaatgatgttaaagtagaatatgcagat
gtcctttccaaattggccttcttgaacagacagcctcccagcacaggccgctgctcccct
ccacgctgctggaccccaacagagcctgagactttccacataccaccagaaaatccatcc
ctttccactcttttgcaccgtctcacaggatttcgcagaagaggtggccgtgcaggctgt
atggggagtagaggagggggagcagctggatcctctgattcttttaagaggtcattcagt
gacttctttgaaacaattggcaaaaagcgtaaggtccccgcatctgaaccaggaactcct
cggaaaagaggcaagggtgtcgctgggggaataagcagggcagctttaggtgactctgta
caaggtgagaaggttagaaaacggcgggcacgaaagaatggggcttcaaaaaattgcgca
ggtgcccaagagcatgactggcaaaatgagaacagtagttggatagggaaaggtgacaga
gacattcatgagaaagcaagtagttatcagagtccttgctcccctcgtggaagttttcaa
agcagtgaggctagtaagggtgggatgtaccacagccccggtatgagaggggtgtgcagt
ggagaagagtctcagggaatgtttgcaggatattttcgctctctacttgattctgatgac
tcctctgacctgctagacatttccatgtccagccctgctggacgccaggaaggccgtaaa
ctcaccccaggatatgagggtggcagccctggtgcagcgcatcgttggtctcctgccttc
cctaaaagaagtcctaaaggagcagcctgtcttggggaaggggcgccattaccctcaccc
caaactcaaggcagctcggcaactaaaccctcatattcattcagtgtctcacagacttct
ccaactccatccttccctaaatcccctgcactcttgctttcccgttcacccagctctcca
catccctctggaggttttcctcaatatccacctagttatagtgctggggttcctcaagga
ggaagtatttaccccctccctcaacagcagcagcaacagcaaaggccaagtgactgtagc
tttacatatggtacaaaaactccctctgttccctctgcacagtgtcagatgagttattcc
aactaccagggttctgccaagcgcaattatagtggatatccaggcccaccccattcaaac
atacagcgaggggactctggcgcaacctcaccaggtggaagttatatgtcaatgacaaag
tctagcccctattccttatcctcttccccgcctgagggttgcagacagtacacctctaca
gctcagtggggatacaggcaagggggaaataactggggtagtgatgcatatggtactcaa
cagtttcatggttactctgattatggtgtagctggaactggatcagaatccaaagacatt
ctggacatctcaaactacacaccccaaaaagccaaacagcgtccctgccttgacacactc
tctgaatcctcctcagactcttctcacactggtggtggaggagggatgagtgttgtgggt
ggaccatttcgcccaagggatgttcctatgcctgagggtcagtctagcctttcaagcctg
gagaagctaatgcttgactggaatgagaattcggccggcccttcttacaactggagtcag
aatgtactattccaagggggggccaaaccaggccgtgggcgaaggaaaaagtctgagaca
cacaatgagaaggaagcatgctctgttcccccaggttcacctgccagccctcctatgcaa
ggaggaccaaaacggagtgctacaggtggtagacagcccaggggatcaagaggcagggga
ggatactctccttgccaaagagatcgtcccccaccaaaaaccaaatctcaaaagccttca
accccatcagggtcagggcacatgagttcggggggtctgtaccaagaagcattggactac
tacagtggagatagtagtagcctatcacctctcagccatgccccagagtcctgtgaatac
ccctctccatattctgtccacacttctactccctcctcagatgagagatttgctcatgtc
tttcctccggactctgcctctgtgtcccccagtttatcaaatcagtcagatgccctaaag
cagtaccctaaacctggtcctccctcacagacttatgggcatgctgccaggacttttagc
ccaaccctctccccaacccctcggctcttgccgcagtgtggttctgccatgagtccgcat
cgggtcccaaaagagcagttctcccagtatgattccccaagttacagtggctctccctgc
tggtatgggcaaggaggaagtgtcgctggcagcccccaaaattatgaggaacagcgacca
ccagcagtctctttgccctcccacaaacgggacatgtcattgatggtctctgggatgaga
gttacatcccattcatcttacccttcccctttacaaagaggtccttccatgtcaacttgt
gtgagtgggactctggactcttcccctcagcatgatgagatggcttaccatggtaacttg
gacaactatgcacctgttggacaccgttatgcaccccaaacagcccggggaggggtactc
tgccagcttcttgaccagccgagcgatgaaggcttcaccgtcaccagcctgtag
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