Squalius cephalus (European chub): 307164427
Help
Entry
307164427 CDS
T11930
Symbol
sox10
Name
(RefSeq) transcription factor SOX-10
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
scep Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scep03000
]
307164427 (sox10)
Transcription factors [BR:
scep03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
307164427 (sox10)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sox_N
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
307164427
NCBI-ProteinID:
XP_079737396
LinkDB
All DBs
Position
1:18993964..19001633
Genome browser
AA seq
484 aa
AA seq
DB search
MSAEEHSMSEVEMSPGVSEDGHSMSPGHSSGAPGGPDSPLPGQPPLIPGVGEDGAGVSAG
VSVKSDEEDDRFPIGIREAVSQVLNGYDWTLVPMPVRVNSGSKSKPHVKRPMNAFMVWAQ
AARRKLADQYPHLHNAELSKTLGKLWRLLNETDKRPFIEEAERLRKQHKKDYPEYKYQPR
RRKNGKPGSSSEGDGHSEGEVSHSQSHYKSLHLEVAHAGVTGSPLADGHHPHATGQSHSP
PTPPTTPKTELQGGKPGEGKREGGASRSGLGAGPDGSSASSSGGGGKPHIDFGNVDIGEI
SHDVMANMEPFDVNEFDQYLPPNGHPQASSAGSSASPYAYGISSALAAASGHSTAWLSKQ
QLPSQQHLGSDGGKTQIKSETHFASDAATASGSHVTYTPLSLPHYSSAFPSLASRAQFAE
YAEHQASGSYYAHSSQTSGLYSAFSYMGPSQRPLYTAIPDPGSVPQSHSPTHWEQPVYTT
LSRP
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggaggagcacagtatgtctgaggtggagatgagccctggggtctcggaggac
ggtcactccatgtcccccggccactcttcaggagctccagggggcccggactcccctctc
cccggccagccgcctctgatcccgggcgtcggggaggatggagccggagtctccgccggg
gtctcggtgaagtccgatgaagaagacgaccggttccccatcggcatccgcgaggctgtc
agtcaggtgctcaacggctacgactggacgctcgtgcccatgcccgtgcgcgtgaactcg
ggcagcaagagcaagccgcacgtgaagcggccgatgaacgcgttcatggtgtgggcgcag
gccgcgcgcaggaaactggcggatcagtacccgcacctgcacaacgccgagctcagcaaa
acactgggaaaactttggaggctgctgaacgagacggataagaggccgttcatcgaggag
gccgagcgtttgaggaagcagcataagaaggactatcccgagtacaagtaccagcctcgt
cgacgcaagaacggcaaaccggggtcgagctctgagggcgacggccactccgagggcgag
gtcagccacagccaatcacattacaagagcctgcacctggaggtggcccacgccggggtc
acggggtcaccactggccgacggacaccacccgcacgccacaggtcagagtcacagccct
ccgacgccccctacgaccccgaagacggaactgcagggcgggaaacccggcgagggaaag
cgtgagggcggagcctcccggagcggtttgggggcggggccagacggaagctctgcctcc
tcgtccggcggcggcggcaaaccacacatcgacttcggcaatgtggacatcggcgagatc
agccacgacgtgatggccaacatggagccgttcgacgtgaacgagttcgaccagtacctc
ccgccgaacgggcacccgcaggcgtcgagcgccgggtcttcggcgtcaccgtacgcgtac
ggcatctccagcgctctagcggccgctagcgggcactccaccgcatggctctccaaacaa
cagctgccatcccagcagcacttgggctcggatggagggaaaacgcagattaagagcgag
acgcacttcgctagcgatgccgccacggctagcggttcgcacgtaacatacacgcctctt
agcctgccacactacagctccgcctttccctcgctggcgtcgcgcgcgcagttcgcggag
tacgcagagcaccaggcgtccggctcgtactacgcccactccagccagacctcgggcctg
tactccgccttctcctacatgggcccctcgcagaggcccctgtacaccgccattcccgac
cccggatccgtgccgcagtcgcacagcccgactcactgggagcagcccgtctacaccacg
ctatcccgaccgtga
DBGET
integrated database retrieval system
