Squalius cephalus (European chub): 307164632
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Entry
307164632 CDS
T11930
Symbol
col4a1
Name
(RefSeq) uncharacterized protein col4a1
KO
K06237
collagen type IV alpha
Organism
scep Squalius cephalus (European chub)
Pathway
scep04382
Cornified envelope formation
scep04510
Focal adhesion
scep04512
ECM-receptor interaction
scep04518
Integrin signaling
scep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
307164632 (col4a1)
04518 Integrin signaling
307164632 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
307164632 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
307164632 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
307164632 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scep04147
]
307164632 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
scep00536
]
307164632 (col4a1)
Exosome [BR:
scep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
307164632 (col4a1)
Glycosaminoglycan binding proteins [BR:
scep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
307164632 (col4a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
307164632
NCBI-ProteinID:
XP_079737778
LinkDB
All DBs
Position
9:complement(27127541..27189531)
Genome browser
AA seq
1640 aa
AA seq
DB search
MRLPCVTVFLLTVSLSIDKSTAKGGCSGSSCGGCDCSGVKGAKGEVGLPGLMGHVGFPGL
QGHEGPPGPMGPKGDTGESGAPGMKGSRGPPGVAGFPGRPGIPGLPGLEGAPGPHGIPGC
NGTKGERGFDGIPGSPGLQGPPGIPGLKGVKGDPGGVIGVPIPQKGDRGFPGPPGSPGQK
GYPGTQGPLGPPGPIGPPGRPGETGQKGEPGDKLTFVGEKGEMGQKGLTGPPGPPGRQEE
FEGRGTTIYLPGPTGETGSKGDKGEKVSCAEYQPGIKGEQGPPGPIGKPGKDGQSGEKGE
SGLPGTLGFDGIKGDKGEKGPPGHGFGRPGPPGPPGPLGAEGERGYPGERGYPGPPGRYI
EGPPGPPGLPGEIGQKGDKGADGVSLKGPNGADGQPGPPGPPGPINEDCDIEKGLPGPPG
PAGLPGEVGQKGDQGETCTECTGSSLPGLPGPQGPKGQQGFPGQVGSKGEKGVPGPFGPA
GNPGQDGSPGLMGAPGAQGEPGDVFVAPGLKGDKGYPGTTGDRGFPGLDGLPGRDGQPGQ
SGAKGEPARFGIKGDRGLDGDVGTTGLPGERGPPGIPGVGQPGEPGEKGSSGFPGTPGRP
GFPGSKGDAGRVISLPGPQGAPGPRGETGRPGLQGDRGLQGEHGRQGFPGNKGDPGLPGI
GLPGPPGQKGYSGIPGPNGIPGEPGQPGQDGFPGRAGTPGQKGEPGRGLPGPKGAIGLQG
VPGFPGEKGNPGMAGVPGTEGSIGPPGPQGIKGDHGPPGIHGAVGPPGPPGHGEPGPPGP
MGPPGGPGPLGRIGIKGEKGYQGLPGLDMPGPPGDRGNPGVPGLTGSKGFPGPPGDPGND
GFPGERGPKGEIGIMGITGTPGFPGLIGDPGEPGQRGDPGLIGIRGVFGDSGPKGERGDQ
GLQGPPGNMTDVDMVNFKGDKGDSGDPGDPGPAGDKGFPGTRGDPGMQGKDGMPGSPGQP
GQKGDSGIPGDPGRIGEPGDTGPRGDMGLPGSIGQKGYKGVGGLPGHPGFKGFDGSKGDK
GDPGPEVFGIPGPPGAKGNIGAPGFPGDPGDKGQKGTMGVPGSPGSQGTKGDTGLIGYQG
SPGKPGEKGVSGLPGSPGDPGLSGRPGEPGLQGPPGPYGEKGEAGVDGIPGFTGERGVPG
IPGKGFPGTRGEAGGKGDKGNPGLPGIPGSPGIPGTKGEKGVQGFSGEIGQPGERGLPGA
SMEGPKGDRGPQGQPGEKGTTGVPGQPGFPGSVGSKGDKGDVGIPGPRGSQGYKGDKGFI
GEPGESGLPGYNGPKGEMGPQGVPGFPGIKGEEGVFGSKGDVGDRGFPGLKGSEGPPGPP
GPHTFVKGEPGLPGPQGPQGLVGNQGFPGPKGQHGVMGPQGLKGSDGTPGYDGNHGAKGE
PGQTGPTGPRGYPGPSGPDGIPGHIGPPGPSSMDHGFLVTRHSQTVDVPQCPDGTTLIYE
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCTINNVCNFASRNDYSYWLTSPEPM
PMSMAPVTGQSIKPFISRCSVCEAPAMVIAVHSQTIQIPTCPRGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSDMFTKPVPTT
LKAGNLRTHISRCQVCMKRV
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttccatgtgtcactgtttttcttctcacggtctctttgagcatagacaagagc
acagctaaggggggatgctcagggtcttcatgtggcggatgtgactgcagtggtgttaaa
ggcgcaaagggtgaggttgggctccctggtttaatgggccatgtcggatttcctggattg
caaggtcacgagggccccccagggccaatgggaccaaagggagatacaggagagtcagga
gctccaggaatgaaaggaagcagaggcccacccggtgtggcaggtttcccaggacgtcca
ggtattccaggtcttccaggtctagaaggcgcacctggacctcatggaattccaggctgc
aatggaaccaagggggagcgtggttttgacggaattccaggttctccaggactgcaagga
ccaccaggtattccaggtttgaagggagtaaagggagatccaggtggtgttattggagta
cccatccctcaaaaaggagacaggggctttccaggaccacccggttcaccagggcaaaaa
ggatatcctggaacacaagggccactcggcccacctggaccaattggacctcctggaagg
cctggtgaaactggtcaaaagggagagccgggtgacaagttgacatttgttggtgagaaa
ggagaaatgggacaaaaaggtttaaccggtccccccggtccacctgggagacaagaggaa
tttgaaggccgtggcacaacaatttatcttcctggaccaacgggtgaaacaggctctaaa
ggagacaaaggagaaaaagtttcttgtgcagaatatcaacctggaatcaaaggagaacaa
ggaccaccaggaccaatagggaaaccaggcaaagatggacagagtggagaaaagggggaa
agtggcctccctggtactcttgggtttgatggcataaagggtgacaaaggagaaaaagga
ccaccaggacatggttttggtcgtcctggccctcctggtcctcctggtcccctcggagca
gaaggagagagaggttatccgggagagcgtggatatcctggtcccccaggcagatatatt
gagggtcctcctggacctcctggccttcctggagagattggccagaagggagataaagga
gctgatggagtgtctcttaaaggtccaaatggagctgatggacaacccggcccacccggc
ccacctgggccgatcaatgaagactgtgatattgaaaaaggacttccaggccctccggga
cctgcagggttgccaggagaggtgggacagaaaggtgatcaaggcgaaacatgcacagag
tgcactggttccagcctcccaggtttgcctggtccccaggggccaaagggtcagcaaggt
tttcctggacaagtagggagtaaaggagagaagggtgtgccaggaccttttgggcctgct
ggaaatcctggtcaagatggctctccgggtttaatgggtgcccctggcgctcagggtgaa
cctggtgatgtctttgtggctccagggttgaaaggagataagggttatcctgggactaca
ggagacagaggatttccaggtcttgatggcctcccaggaagagatggccaaccagggcaa
tctggagccaagggagagcctgccagatttggtattaagggtgatcgtggcctggatgga
gatgttggtaccaccggccttccgggtgagagaggtccccctggtatcccaggtgtagga
cagccaggtgaacctggtgaaaaaggctcttcagggtttcctggtacaccaggaaggcca
ggatttccaggaagtaaaggtgatgctggtagagtaataagtttacctggacctcagggt
gccccagggcctcgtggagagactggcagacctggtcttcaaggtgatagaggtcttcaa
ggtgaacatggacgtcaaggattcccaggaaacaaaggtgaccctgggctgcctggaatt
ggacttcctgggcccccagggcaaaaaggatactctgggattccaggtcccaatggaatt
ccaggagagcctggtcaaccaggccaggatggctttcctggtcgtgcagggacacctggg
caaaaaggtgaacctggcaggggtcttcctggtcctaagggtgccataggtctgcaagga
gtgccaggatttccaggggaaaagggtaatcctggaatggcaggggttcctggaactgag
ggaagtattgggccacctggacctcaaggaatcaaaggtgaccatggaccacctggaatt
catggtgcggtggggccgccaggtcctccaggacatggagaacctggaccacctggacca
atgggaccacctggaggccctggaccccttggtcggataggtataaagggtgaaaaaggt
tatcaaggtctacctggtctggacatgcctggccctccaggagacaggggtaaccctggt
gtcccaggtctaacaggatctaagggttttcctggtccaccaggagatcctggaaacgat
ggcttccctggtgaacgtggtccaaaaggagaaattggaatcatgggaattacaggaacc
cctggatttccaggtctcattggagaccctggagaacctggacaaagaggtgaccctggt
ttgattgggatcaggggagtgtttggtgattcaggtcccaagggtgagaggggagatcag
ggtctacaggggccacctggtaacatgactgatgtggatatggtgaactttaaaggagat
aaaggagacagcggagacccaggtgatcctggtcctgctggagataaggggttccctgga
acacgtggagaccctggaatgcaaggaaaagatggaatgccaggatcacctggacagcca
ggtcagaaaggagactctggaatccctggggatccaggacgtattggagaacctggagac
acaggtccaagaggagacatgggacttccaggttcaattgggcaaaaaggttataaaggt
gttggtgggttaccaggacacccgggatttaagggttttgatggctccaaaggagataaa
ggagatcctggtccagaagtattcggaatccccggtccccctggagcgaagggaaatata
ggagcccctggtttccctggagaccctggagataagggacagaagggtacaatgggtgtc
ccagggagtcctggatctcaaggaactaaaggagacacaggacttattggttaccaaggc
agtccagggaagccaggtgagaaaggtgtcagtggtttgccagggtccccaggagatcct
gggttatcaggacgtccaggtgaacctggtcttcagggtcctccaggtccatatggggaa
aaaggtgaagcaggggtagatggaattcctggattcactggagagagaggagtacccggt
atacctgggaaaggatttccaggaacccgcggagaggctggtggcaaaggtgacaaaggc
aaccctggtcttcctggcattcctgggagtccaggtattcctggaaccaaaggtgagaaa
ggtgtgcaaggattctcaggggaaattggtcaacctggagagagaggacttccaggagca
tccatggaggggcctaaaggggacaggggacctcaggggcagccaggagaaaaaggtacg
actggtgttccaggccaacctggctttccaggcagtgttggatctaaaggagataaggga
gatgttggcatccctggcccacgaggctctcaagggtataaaggagacaaaggtttcatt
ggtgaacctggtgagtctggattgcctggttataatggaccaaagggtgagatgggacca
cagggtgttcctggtttccctggtataaagggtgaggaaggagtgtttggttccaagggt
gatgtaggtgatagaggattcccaggtctcaaaggtagcgaaggcccccctggaccccct
gggccacacacatttgtaaagggagaacctggtcttccaggaccacagggtccccaaggt
ctagttggaaaccaaggcttccctggaccaaaaggacaacacggtgtgatgggacctcag
ggtttgaaaggatctgatgggacacctggctatgatggaaatcatggagccaaaggagag
cctggacagactggacctactggccccagagggtaccctgggccctcagggcctgatggt
atcccaggtcacatcggccctcctggcccttcctcaatggaccatggcttccttgtaacc
cgccacagtcagactgttgatgttccacaatgtcctgatggaacaacactgatttacgaa
ggatattcactgctttatgtccagggcaatgagagatcacatgggcaagacctaggtaca
gctggtagctgcctaaggaagttcagcccaatgcctttcctcttctgcaccatcaacaac
gtatgtaattttgcatctcgtaatgactattcctactggctcacctctcccgagcccatg
ccaatgagcatggcccctgttaccggtcagagcatcaaacccttcatcagcagatgttca
gtttgtgaggctcctgctatggtgatagcagtgcacagccagaccatccagatcccaacc
tgccctcgcggttgggattctctctggatcggatactctttcgtcatgcacaccagtgct
ggtgctgagggctccggtcaagctctggcctctcctggctcttgtctggaagaatttcgt
tcggctcccttcatcgagtgtcatggtcgcggcacctgcaactactatgctaattcctac
agcttctggttagccaccatagaggacagcgatatgtttacgaaacctgtccctacaaca
ctaaaagccgggaatctacgaactcacatcagcaggtgtcaagtgtgcatgaagagggta
tag
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integrated database retrieval system
