Squalius cephalus (European chub): 307164856
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Entry
307164856 CDS
T11930
Symbol
ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
scep Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scep03041
]
307164856 (ddx18)
03009 Ribosome biogenesis [BR:
scep03009
]
307164856 (ddx18)
Enzymes [BR:
scep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
307164856 (ddx18)
Spliceosome [BR:
scep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
307164856 (ddx18)
Ribosome biogenesis [BR:
scep03009
]
Eukaryotic type
90S particles
Helicases
307164856 (ddx18)
Pre-60S particles
307164856 (ddx18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
307164856
NCBI-ProteinID:
XP_079738157
LinkDB
All DBs
Position
9:complement(10719102..10726239)
Genome browser
AA seq
660 aa
AA seq
DB search
MADMQMKILRKKIQKRNEKNKQRKLLRSQKEEEEIGGEVKVVLEEADVTRDSAPKITEEQ
KQQSISTEAGETSQKTKKKKKRKLNGTGDSTSSVKKVKKQDEVKETTEASGGEEQQESDE
KQEEECAESGKFSENGNEKEGSAEEDDSDEDGPQLPSGLTGAFEDKSFASLAEVVSENSL
KGVKEMGFETMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNG
TGVVILSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGVNILVATPGR
LLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQTMLFSATQTRKV
EDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVF
FSSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADTGILLCTDVAARGLDI
PEVDWIVQYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGFLRFLKQAKVPLSEF
EFSWTKISDIQSQMEKLIEKNYYLHKSAQEAYKSYVRAYDSHSLKQIYNVETLDLPKVAM
SFGFKVPPFVDLNVHSSKGVKMQKRGGGGGFGYQKSKNVHKARIFKHVNKGKGDGRQFSR
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcggacatgcagatgaagattctgcgcaagaaaattcaaaagagaaatgaaaaaaat
aaacaacggaaacttctcagatctcagaaggaagaagaagaaatcggcggagaggtgaag
gttgtgctggaagaagctgatgtgacccgtgattctgctccaaaaatcactgaagagcag
aagcagcaaagtatctccaccgaggccggcgaaacctcacagaaaaccaagaagaaaaag
aaaagaaaattgaatggcacaggcgactcgacatccagtgtgaaaaaggtcaaaaagcag
gatgaagttaaagagacaacagaagcatcagggggagaagagcagcaagagagtgatgag
aaacaggaggaggaatgtgcagagtctgggaagttttcagagaatggaaatgaaaaagag
ggatcagctgaggaggatgatagtgatgaagatggaccacagcttccttctgggctgaca
ggtgcgtttgaggacaagtcatttgcatctttggcagaagtggtcagtgagaattcactg
aagggagtgaaagaaatgggctttgaaaccatgacagagatccagcacaagaccatacgc
ccactgctggaggggagagacgtgttggccgcagctaaaacaggaagtggtaaaacactg
gctttcctgattccctccattgagcttatctacaaactcaaattcatgcccagaaatggg
actggagttgtcattctgtctcccactcgtgagttggctatgcagacatatggtgtgctg
aaggagctgatgacgcatcacgtgcacacatacggcctcatcatgggaggaagcaatcgt
tctgcggaagcccagaaactcgctaatggagtcaacatcctggttgctacacctggcaga
cttctcgatcacctgcagaacacgcctggattcatgtttaagaaccttcaatgtctgatc
attgacgaggctgacaggattctggaggttggctttgaggaagaacttaagcagatcatc
aaactactgcctaaaaaaagacagaccatgttgttttcagcaacacagacacggaaggtg
gaggatcttgcacgaatctccctcaagaaggagccgctgtatgttggggtggatgacaac
aaagacacggccactgtggaaggacttgaacagggatatgtcgtatgtccttcggagaaa
cgtttcctgctgctcttcacgtttctgaagaagaatcgtaagaagaagctgatggtgttc
ttctcgtcctgcatgtctgtgaagtaccattatgagctgcttaactacattgacctgccc
gtcatggccattcacgggaagcagaaacagactaagagaaccacaacatttttccagttc
tgtaatgcagacactggcattctcctctgtacggacgtggctgccagaggtctcgatatc
ccggaggtggactggattgttcagtacgatccacctgatgatccaaaggagtacattcac
cgtgtcgggcgaacagctcgtggtattaacggcagaggacatgccctcctgatcctgaga
ccagaggagctcggctttttgcgattcctcaaacaggccaaagtccctctgagtgagttt
gagttctcctggactaaaatctcagacattcaatctcagatggagaagctgatagagaag
aactactaccttcataaatctgctcaggaggcctacaaatcctacgttagagcttacgac
tctcattccctcaaacaaatctataacgtagagacactcgacctcccgaaggtggcgatg
tcttttggttttaaagtgccgccttttgtggacctcaatgttcacagcagtaaaggggtg
aagatgcagaagcgaggtggtggcggaggcttcggctaccagaaatctaagaacgtccac
aaggccaggatcttcaaacacgtcaacaaagggaagggagacggcagacagttctcacgc
tga
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