Squalius cephalus (European chub): 307165155
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Entry
307165155 CDS
T11930
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform 1
KO
K12821
pre-mRNA-processing factor 40
Organism
scep Squalius cephalus (European chub)
Pathway
scep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307165155 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scep03041
]
307165155 (prpf40a)
Spliceosome [BR:
scep03041
]
Complex A
U1 snRNP components
U1 related factors
307165155 (prpf40a)
Complex B
307165155 (prpf40a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
Motif
Other DBs
NCBI-GeneID:
307165155
NCBI-ProteinID:
XP_079738625
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All DBs
Position
9:<33299705..33336718
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AA seq
851 aa
AA seq
DB search
MMGPPGIPPHFPPMGMPPMGQRPPSMAPMPPGIMPPMMPPMGAPPMGQMPAMMPPMIPGM
MMPPRMPAASIQPTGPPGVSPVEPAAPAAPGTTSTTSTESSPDEQTKKKSVWTEHKSLDG
KTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKE
LEDLEAMIKAEENGTADVVAPGTTPVLPSQIEPPVTVAAVAETEVTMATGTSEEPPSHVP
AQVAEVSSDVIVNSTEETPSVETQPSNDVSKEERPELVKKVYKWNTKEEAKQAFKELLKE
KGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKET
FQRFLENHEKMTSTTRYKKAEQMFADQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQL
RKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIR
ALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSAWMEMYPTVSADIRF
NNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEINTGFEDFGSVISSD
KRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPEAT
WEGVRERFLKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRS
RSRSGSESEDDEYHSKKKKRSTSKSPSEHTSSGESERSYKKSKKHKKKGKKRRHKSASPE
SEGEKERKGREKEKDKENDKSRVKSRGESKQKSPKRKSAKEEGGWDTSGSELSEGELEKR
RRTLLEQLDAP
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgatggggccaccaggaatcccgcctcacttccctccaatgggaatgccacccatgggt
cagaggccgcccagcatggcccccatgcccccgggaataatgccccccatgatgccccca
atgggagctccacccatgggacagatgccagccatgatgccaccaatgataccaggaatg
atgatgcctccccggatgccagctgcatcaatccagcctacaggaccgcctggtgtgagt
ccagttgagcctgcagcgccagctgctcccggaacaacaagcaccacatcaactgagtct
tcacctgatgaacagacgaaaaagaagtcagtatggaccgagcacaaatcactggatgga
aaaacatattactacaacacagagaccaaacaatccacctgggagaaaccagatgagctc
aaatcacctgcagagcaaatgttgtccaagtgcccgtggaaagaatacaagtcagacacc
ggaaagccctattactataactcgcagaccaaagagtctcgctggactaaacccaaagaa
ctggaggacctggaggcgatgataaaggcggaggaaaatgggacggctgatgttgtggct
cctggcaccacccctgttcttccatctcagatcgagcctcctgttactgtggcagcagtt
gctgagacagaggttaccatggcgacgggcacctcagaggaaccgccgtctcacgtgccc
gctcaggttgctgaggtcagcagtgatgtcatcgttaactccactgaggaaacgcccagc
gtagagacacaacccagtaatgatgtttctaaggaggagagacctgagctggtgaagaaa
gtttacaagtggaacacaaaagaggaggcaaagcaggcctttaaagaacttttgaaagaa
aagggtgtttcctccaatgcatcatgggagcaggcaatgaagctgataattaacgaccct
cgttacagtgctctgcccaagctgagtgaaaagaaacaggcgttcaatgcttataaagtc
cagacagagaaagaggaaaaggaagaggccagaatcaaatacaaggagtctaaagagact
ttccagcgctttctggagaaccatgagaagatgacttcaaccacacgatacaagaaagcg
gagcagatgtttgccgatcaggaagtgtggtcgtgtgttcctgagagagacaggctggag
atctatgaagatgtgcttttctatctggctaagaaagagaaggaacaagccaagcagctc
aggaagaggaactgggaggcgctgaagaacattttggacaatatggccaatgtaacatac
agaacaacatggtctgaggcacagcagtacctgctggacaaccccacttttgctgaagac
gaggagctacagaacatggacaaggaggatgcgttgatctgctttgaggaacacatccgt
gctcttgagaaagaggaggaggacgagaaacagaaaactcttctgcgagaaagacgcaga
caacgcaagaacagagagtccttccagaaattcctggatgagcttcacgatcatgggcag
ctgcactccatgtctgcctggatggagatgtacccgaccgtcagcgctgatatccgcttc
aacaacatgctgggccagccaggctccacccctctggacttattcaagttttacgtggag
gatctcaaagctcgttaccatgatgagaagagaatcattaaagacatcctgaaggataag
ggcttcctggtggagatcaacacaggctttgaggattttggctcagtgatcagctctgat
aaacgcgccaccacgctggatgcaggaaacatcaaactggccttcaacagtttgctggag
aaggctgaagcacgtgagagggagagagagaaagaggaggccaggaagatgaagaggaag
gaggcggcgtttaagagcatgctgaaacaggccacgccccctctagagcctgaggccaca
tgggagggagtacgagagcgtttcctaaaagagcctgcgtttgaggacatcactctggag
tctgagaggaagaggatattcaaagacttcatgcatgtactagagcacgaatgtcagcat
catcactcaaagactaaaaaacactccaagaaatccaagaaacaccacagaaaacgttcc
cgatctcgatcaggctcggagtcagaggatgatgagtatcactcgaagaagaagaaacgt
tcgacttctaaatctccgtctgaacacacttcctctggggaatctgagagaagttacaag
aaatctaagaaacacaagaagaagggaaagaaaagacgacacaaatcagcctcccctgag
tctgaaggagagaaagagcggaaaggaagagagaaagagaaagataaagagaacgacaag
tccagagtgaaatcacgtggagaatccaaacagaaatcccccaaaagaaagagtgcaaaa
gaagagggtggatgggatacgtctggcagtgaactgagtgaaggagagctggagaagagg
aggcgcactctcctggagcagctcgacgcaccataa
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