Squalius cephalus (European chub): 307166019 Help Entry 307166019         CDS       T11930                                  Symbol atg4b Name (RefSeq) cysteine protease ATG4B   KO K08342   cysteine protease ATG4 [EC:3.4.22.-] Organism scep  Squalius cephalus (European chub) Pathway scep04136   Autophagy - other scep04140   Autophagy - animal scep04145   Phagocytosis Brite KEGG Orthology (KO) [BR:scep00001]  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagocytosis     307166019 (atg4b)    04140 Autophagy - animal     307166019 (atg4b)    04136 Autophagy - other     307166019 (atg4b)  09180 Brite Hierarchies   09181 Protein families: metabolism    01002 Peptidases and inhibitors [BR:scep01002]     307166019 (atg4b)   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:scep04131]     307166019 (atg4b)    03029 Mitochondrial biogenesis [BR:scep03029]     307166019 (atg4b) Peptidases and inhibitors [BR:scep01002]  Cysteine peptidases   Family C54: Aut2 peptidase family    307166019 (atg4b) Membrane trafficking [BR:scep04131]  Autophagy   Autophagosome formation proteins    Atg8 conjugation proteins     307166019 (atg4b) Mitochondrial biogenesis [BR:scep03029]  Mitochondrial quality control factors   Mitophagy factors    Autophagy-related proteins     307166019 (atg4b) SSDB OrthologParalogGFIT Motif Pfam:  Peptidase_C54 ATG4_LIR Motif Other DBs NCBI-GeneID:  307166019 NCBI-ProteinID:  XP_079740248 LinkDB All DBs Position 10:complement(18015438..18022992) Genome browser AA seq 394 aa AA seqDB search MDAATLTYDSLRFGEIEDFPETSEPVWILGKQFSALTEKDDILADVTSRLWFTYRKNFQP IGGTGPTSDTGWGCMLRCGQMILGEALVCRHLGRDWRWIPGQRQRAEYISILNAFIDKKD SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDSWSRLAVHVAMDNTVVIEEIK RLCMPWLDFDRGACAVSDEPLEMNGDREGACALAEEETALWKPLVLLIPLRLGLSDINEA YIEPLKQCFMMPQSLGVIGGKPNSAHYFIGFVGEELIYLDPHTTQPAVDPSEGGHFPDDS YHCQHPPCRMHICELDPSIAAGFFCQTEDDFDDWCAQIRKVSNCRGLPMFELVDSQPSHL IGADVINLTPEFSDSDRLERFFDSEDEEFEILSL NT seq 1185 nt NT seq  +upstreamnt  +downstreamnt atggatgcagctactctcacatacgactcattgcgctttggagagatcgaagatttcccg gagacctctgagcctgtctggattttgggaaagcagttcagtgctctgacagagaaagat gatattctggcagacgtcacctcacgtttgtggttcacgtacagaaagaactttcagcca attggtggcactgggcccacttcagacactggttggggctgcatgcttcgatgtggacag atgattcttggggaggccttggtctgcaggcacttgggtagagactggagatggattcca ggtcagcggcagagagcagaatatatcagtatcctcaatgccttcattgacaagaaggac agctattattccatccatcaaatagctcagatgggtgtaggtgagggaaagtctataggc caatggtatggtccaaatacagtggcacaggtactcaagaaactggcagtatttgactcc tggagccgactggcagttcatgtagctatggacaatactgtggtcatagaggaaatcaag aggctgtgtatgccgtggctggacttcgacaggggtgcatgtgcggtttcagacgagcct ctggagatgaatggtgatcgggagggggcttgtgctctggcagaagaggagacggcttta tggaaaccccttgttctgctgattcctctgagactgggcctcagtgatatcaatgaagct tatattgaaccactcaagcaatgcttcatgatgcctcagtctttaggagtaataggtgga aagccaaacagcgctcactacttcattggctttgtaggtgaggagctcatttatctagac ccccatacaactcagccagctgtggacccaagtgaagggggtcatttcccagacgactcc taccactgccagcaccctccctgccgaatgcacatctgtgagcttgacccctccattgct gctggctttttctgtcaaacagaggatgattttgatgactggtgtgcacagattcgtaag gtttctaactgtagaggtcttcctatgtttgaattagtagacagtcagccatctcatcta attggcgccgatgtaattaatcttactccagaattttcggattcggaccggctcgagcgc ttctttgattctgaggatgaagaatttgaaatcctgtctttgtga

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