Squalius cephalus (European chub): 307166397
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Entry
307166397 CDS
T11930
Symbol
atg4c
Name
(RefSeq) cysteine protease ATG4C isoform 1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
scep Squalius cephalus (European chub)
Pathway
scep04136
Autophagy - other
scep04140
Autophagy - animal
scep04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
307166397 (atg4c)
04140 Autophagy - animal
307166397 (atg4c)
04136 Autophagy - other
307166397 (atg4c)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
scep01002
]
307166397 (atg4c)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scep04131
]
307166397 (atg4c)
03029 Mitochondrial biogenesis [BR:
scep03029
]
307166397 (atg4c)
Peptidases and inhibitors [BR:
scep01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
307166397 (atg4c)
Membrane trafficking [BR:
scep04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
307166397 (atg4c)
Mitochondrial biogenesis [BR:
scep03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
307166397 (atg4c)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
307166397
NCBI-ProteinID:
XP_079740845
LinkDB
All DBs
Position
10:15025346..15035231
Genome browser
AA seq
476 aa
AA seq
DB search
MCCDGFCSVANTMETKETDEVEKLKSKFMSAWHNVKYSWALKSKTAFSRNSPVFLLGKCY
HFKAVDDESPTESHSAEALDGDVVTGNVDGFRRDFTSRVWLTYREEFPALPGSTLTSDCG
WGCTLRAGQMILAQALMLHILGRDWTWSEALTLEPLDAETWTSSAARRLVATLEASIQGE
RVQVTLPLCPAQGGAEEADSFLQEAYHRTIVSWFGDGLSAQLGIHRLVQLGMTSGKLAGD
WYGPAVVAHILRKAVDGAADAMLKGISVYVAQDCTVYSADVIDSHSARTSSHCDPQGLNT
GAAPDSRAVIILIPVRLGGEKINPEYLSFVKSILSLEYCIGIIGGKPKQAYYFVGFQDDS
LIYMDPHYCQSFVDVSTSDFPLQSFHCPSPKKMSFSKMDPSCTIGFYSKNVEHYERICNE
LSKILEPSSKEKYPAFTFMKGHGKDYELSMAVEKREWPFIRDSRKAGTTSGDFVLL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtgctgtgatgggttctgctccgtggctaatacaatggagactaaagagaccgacgag
gtggagaaactgaagtccaagtttatgtcagcatggcacaatgtgaagtacagttgggct
cttaaatcaaaaactgccttcagtcgtaattctcctgttttcttgttggggaaatgctac
cacttcaaggctgtggatgatgaaagtcctactgagagtcattctgctgaggcattagat
ggtgatgttgtcacaggcaatgttgatggatttcgaagggacttcacctcacgagtttgg
ctgacctatcgagaagagtttcccgcccttccaggctccaccctcacttcagactgtgga
tggggttgtacactccgggcagggcagatgatattggcccaggctctcatgcttcacatc
ttgggtagagactggacctggtccgaagcactgaccttggagccgctggatgcagagacg
tggaccagcagtgcagcacggagactggtggccacattagaggcctccattcagggagaa
agagtacaggtcaccctgcctctctgtcctgctcaaggaggggctgaggaggccgactca
ttcctacaagaggcatatcatcgcaccattgtgtcctggtttggggacggactgtcagcc
cagctgggcatccacagactagtacagctaggaatgacttctggaaaactggcaggagat
tggtacggcccagcagtggtggcacacatactcagaaaagctgttgatggggcagcagat
gcaatgctgaaagggataagtgtttatgtagcacaggactgcaccgtgtacagtgctgat
gttattgatagccattcagcacgaacgagcagccactgtgatcctcagggactcaatact
ggagctgcccctgatagtagagctgtcatcatcctcattcctgtgagattgggtggagag
aagatcaacccagaatacttaagctttgtcaagagcatattaagcttagagtactgtatc
ggcatcattggaggaaagccaaagcaggcctactattttgttggatttcaagatgacagc
ttgatttacatggatcctcattactgtcagtcttttgtggatgtcagcacaagcgatttc
cctctgcagtcctttcattgtccatcaccaaagaaaatgtctttcagtaaaatggacccg
agctgtaccattggattctactcaaaaaatgtcgaacactatgaaagaatttgcaacgaa
ctttcaaagatattggagccatcatcgaaagagaagtaccctgcattcaccttcatgaag
ggacacgggaaggattatgaactttcgatggctgtagaaaagcgagaatggcctttcatc
agggactcaagaaaagcagggacaacatcgggagactttgtgctgctctga
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integrated database retrieval system
