Squalius cephalus (European chub): 307166657
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Entry
307166657 CDS
T11930
Symbol
vps53
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog isoform 1
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
scep Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scep04131
]
307166657 (vps53)
Membrane trafficking [BR:
scep04131
]
Protein recycling
Others
EARP complex
307166657 (vps53)
Endosome - Golgi transport
Tethering complex
GARP complex
307166657 (vps53)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
COG4_N
FBF1
GrpE
Sec8_N
GbsR_C
COG3_N
FKBP15
IFT74
Tropomyosin
O_Spanin_T7
Med11
Seryl_tRNA_N
ING
Motif
Other DBs
NCBI-GeneID:
307166657
NCBI-ProteinID:
XP_079741276
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All DBs
Position
11:complement(17365734..17389309)
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AA seq
832 aa
AA seq
DB search
MMEDEELEFVEDLEAILHLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLAN
IDDVVNNIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEK
SEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKRQYGEVANLLQG
VVNVLEHFQKYMGIPQIRQLSERVKAAQSELGTQILADFEETFPAQGSKKSGGPSIVLRD
ACLVANVLDPRIKQEIIKKFIRQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEE
KYGRMFPEEWWMTERIAVEFCHITRIELAKLMRTRAREIEVKLLLFAIQRTTNFEGLLAK
RFSGCTLNDGPGQKKPETPLEPTNPFLEDESGEDNVSEKEEDLDRPKKPKAPDNPFHGIV
SKCFEPHLYVYIESQDKNLGELIDRFVADFRAQGPPKSGTDEGGAVLPSCADLFVYYKKC
MVQCSQLSTGEPMIALSTIFQKYLREYAWKILSGNLPKTSTNSGGLTISSLLKEKEGSEA
AKFTMEELCLICSILSTAEYCLATTQQLEEKLKEKVDKSLMERINLTGEMDTFSTVISNS
IQLLVQDLDAACDPALTAMSKMPWQSVEHVGDQSPYVTSVIMHIKQNVPIIRDNLASTRK
YFTQFCIKFTNSFIPKFINHLFRCKPISMVGAEQLLLDTHSLKTVLLDLPSIGSQVVRKA
PASYTKIVVKGMTRAEMILKVVMAPHEPSVVFVDNYIKLLADSNPETFQKILDMKGLKRS
EQSTMLELFRQRLPTPPSGPDGGPSLSFSAPTPEQESSRIRKLEKLIKKRIQ
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggatgaagaattagagtttgtggaagatttggaggcgatattacaccttact
ccagaagtgcagctggccattgagcaggttttccccagccaagaccctttggatcgagcg
gacttcaatgctgttgaatacattaataccttgtttccaacagagcagtcattggcgaac
atagacgatgtggtgaataacatacgacttaaaatcagacggttggatgacaacatcagg
acagtggtgaggggacagactaatgtgggccaagatggcagacaagcattggaggaggcc
cagaaagccatccagcaactctttggcaaaatcaaagacatcaaagacaaagcggagaaa
tcggagcaaatggtgaaagagatcacacgggacatcaagcagttggaccatgcaaagcgt
cacctgacgacttctataaccaccctcaatcacctgcacatgctggctggcggtgtggac
tctcttgaagctatgactcgaaagaggcagtatggagaggtggccaatctccttcagggt
gtagtcaacgtgcttgagcacttccagaagtacatgggcatcccccagatacgccagctc
tcagagagagttaaagccgcacagagtgagcttggtacacagatactggctgacttcgag
gagacttttcctgcccaggggtcaaagaaatctggaggtcctagcattgttctcagagat
gcctgcttggtggcgaatgtcctggatcctcggattaagcaggagatcatcaaaaagttc
atcaggcagcacctgtcagaatacctagtactcttccaagagaaccaggatgtggcgtgg
ctcgacaaaatagaccggcgctatgcgtggatcaagcgtcagctcgtggactatgaagag
aagtatggacgaatgttccctgaggagtggtggatgaccgagcgcatcgctgtagagttc
tgtcatatcaccagaatcgagctagccaagctgatgcgaacccgtgccagggagatcgag
gtcaagcttttgctcttcgctattcagaggaccaccaatttcgagggactcctggctaag
cgcttctcaggctgcaccttgaacgacgggcccgggcagaaaaaacctgagacgcctcta
gagccaacaaacccctttctggaagatgagtcaggagaggacaatgtatcagaaaaggag
gaagatctggatagaccaaagaagcccaaggctccagacaaccccttccacggcattgtg
tccaagtgctttgagcctcatctctacgtttacatcgagtcgcaggataaaaatctcgga
gagctgatcgaccgttttgttgctgatttccgggcacagggtccccctaaatcagggaca
gatgagggaggtgctgtacttcccagctgtgcagatctcttcgtgtactacaagaagtgt
atggtgcaatgctcgcaactgagcaccggagaacccatgattgctctgagcaccatcttc
cagaagtatctgcgcgagtatgcctggaagatcctctctggaaaccttcccaagaccagc
accaatagtggtggtctgaccatcagcagcctgctgaaggagaaagagggatcagaagcg
gccaagttcacaatggaagagctgtgtctcatttgcagcatcctaagcacagccgaatac
tgcctggctaccacacagcagctggaggagaagcttaaggaaaaggtggacaagtcattg
atggagagaatcaacttaactggggagatggacacctttagcacggttatctcaaacagt
atccagctcttggttcaggacctggatgctgcatgtgatccagcccttacagctatgagc
aagatgccgtggcagagtgtggaacatgtgggagaccaaagcccgtatgtgacctctgta
atcatgcacatcaaacaaaatgtgcccatcattagagacaacctggcctccacccggaaa
tacttcacgcagttctgcattaagttcaccaactccttcattccgaagttcatcaaccac
ctgttcaggtgtaagccaatcagcatggttggagcagagcagctactcctggacacacat
tccctcaagaccgttcttctagacctcccttccattggctctcaggtggtccgtaaagcc
ccggccagctacaccaaaatagtggttaaaggaatgactcgagcggagatgatcctcaag
gtggtcatggcccctcacgaaccatccgtggtctttgtggacaactacatcaagctcctt
gctgacagcaaccctgagactttccagaagatactagatatgaagggtctgaaaaggagt
gagcagagcaccatgctggagcttttcagacagaggttgcccactccgccctcaggacca
gacggtggtccgtcattgtccttcagtgcccccacccctgaacaagaatcttcccgtatc
cgcaaactggaaaagctcattaaaaagagaattcagtaa
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