Squalius cephalus (European chub): 307166751
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Entry
307166751 CDS
T11930
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform 1
KO
K17890
autophagy-related protein 16-1
Organism
scep Squalius cephalus (European chub)
Pathway
scep04136
Autophagy - other
scep04140
Autophagy - animal
scep04145
Phagocytosis
scep04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
307166751 (atg16l1)
04140 Autophagy - animal
307166751 (atg16l1)
04136 Autophagy - other
307166751 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
307166751 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scep04131
]
307166751 (atg16l1)
03029 Mitochondrial biogenesis [BR:
scep03029
]
307166751 (atg16l1)
Membrane trafficking [BR:
scep04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
307166751 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
307166751 (atg16l1)
Mitochondrial biogenesis [BR:
scep03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
307166751 (atg16l1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
EIF3I
WD40_Gbeta
DSE1_N
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_VPS8
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_NOL10_N
NBCH_WD40
Beta-prop_EIPR1
CFAP251_N
eIF2A
Beta-prop_NWD2_C
Beta-prop_ACSF4
WD40_RFWD3
Tricorn_2nd
Ge1_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_DCAF12
Beta-prop_SPT8
KASH_CCD
PUMA_CC
DUF6212
FKBP15
Fez1
T3SS_needle_F
CLIP1
Motif
Other DBs
NCBI-GeneID:
307166751
NCBI-ProteinID:
XP_079741500
LinkDB
All DBs
Position
11:complement(3517620..3546414)
Genome browser
AA seq
625 aa
AA seq
DB search
MAGRGVGCLWKRHVVEQLKQRDRVQRQAFEEIIHQYNRLLERSDLQVVFSERLQTDKYEH
QNRHDLSPGVDGGRSDSLQQEMAQMRIRHQEELTELHKKRGELAQNVIELNNQIQQKDKE
IQSNEAKMLEYQQQISHLEGECRDLRNTLADLERANQTLRDEYDALQITFSALEEKLRKT
TEDNQELVTRWMAEKAQEANRLNAENEKDTRRRQAKLQKELADAAKEPLPIDQDDDIEVL
SEDAAKATGETSPSRQPSRTPSKRVSQPPPPPPPPGGLLDSITNIFGLSDSVQPGFVPSD
SRRRRSVNSFSSSPEAAEAQSACADVRVPSTALHIFDAHDGEVNAVRFSPGSRLLATGGM
DRRVKLWEVVSGRCEAKGALTGSNAGITSIEFDSAGTYLLAASNDFASRIWTVDDFRLRH
TLTGHSGKVLSARFLLDNTRIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCV
MSGHFDKKVRFWDIRAESIVHELELLGRVTSLDLNHDRTDLLTCSRDDLVKIIDLRSNAV
RQTFNAQGFKCGSDFTRVTFSPDGSYVAAGSADGVLYIWNVLTGKLDKTLDKGHSSAINS
VSWSPSGAYVASVEKGSKAVLWSDM
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgtggagtcgggtgtttgtggaaacgtcatgttgtggagcagctgaagcag
agagacagagttcagcgtcaggcctttgaggagatcatacaccagtataaccggttgttg
gagaggtctgatcttcaggttgttttttctgaacgtctccagaccgacaagtatgagcat
cagaacagacacgacctcagcccgggcgttgacggcggccgcagtgactccctgcagcag
gaaatggctcagatgagaatcagacatcaggaggagctgacggagctgcacaagaaacga
ggagagttggctcagaacgtgattgaactaaacaaccagatccagcagaaagacaaagag
atccagagtaatgaagccaagatgttggagtatcagcagcagatctcgcatctggaaggg
gagtgtcgtgacctccgaaacactctggctgatttggaacgagccaatcagacgctgcga
gacgagtacgatgccctgcagatcacgttcagcgctctggaggagaaactacggaaaacc
acggaggacaatcaggagctggtgacgcgctggatggcggagaaagcccaggaggccaac
agactcaacgctgagaacgagaaggacaccaggcgcagacaggccaagcttcagaaggag
ctggcggacgcagcgaaggagcctctgcccatagaccaagatgatgacatcgaagttctc
tcagaggacgctgcgaaggcaacgggtgaaacgtcaccaagcagacagcccagtcgcaca
cccagtaaacgagtgtctcagcctcctcctcctcctcctcctcctggcggactgctggat
tccatcactaatatctttggcttgtctgattctgtccaacctggtttcgtcccgtctgac
tccagaagacgtcgctccgtgaactcgttcagctcgtctcctgaagctgcagaggcgcag
tcggcgtgtgctgatgttcgagttccctccactgcgctgcacatcttcgacgcccatgat
ggggaagtgaacgccgtgaggtttagtcccggttcccgtctgctcgccacgggaggaatg
gatcgcagggtgaagctctgggaggtcgtatccgggcgatgtgaagccaaaggtgcgctg
acgggcagtaatgctggaatcaccagtatagagtttgatagtgcgggaacgtatttactg
gccgcttctaacgacttcgccagcagaatctggactgttgacgacttcagactgcggcac
acactcacaggtcacagcgggaaggttttatctgctcgctttctcctcgacaacactcga
atcgtctccggcagctacgatcgaacgctcaagctctgggatttacgcagcaaagtctgc
atgaagacggtgttcgctggctccagctgtaatgacatcgtctgcacggagcagtgtgtg
atgagcggacacttcgacaagaaagttcgtttctgggacatcagagcggagagtatcgtg
cacgagctggagttgctgggacgcgtgacgtctttggatctcaatcacgaccggaccgat
ctcctgacctgctctcgtgacgacctggtgaagataatcgatctgcgcagtaatgcagtg
cgacagaccttcaatgctcaaggattcaagtgcggttctgacttcaccagggtcacattc
agtcctgatgggagttacgtggcggccggttctgcagacggcgttctgtacatctggaac
gttcttacaggaaaactagacaaaactcttgataagggtcacagttctgccataaactcg
gtgtcctggtctccgtcgggagcgtacgtggccagcgttgagaagggcagcaaggccgtg
ctgtggtctgacatgtga
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