Squalius cephalus (European chub): 307166804
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Entry
307166804 CDS
T11930
Symbol
med13b
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
scep
Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scep03021
]
307166804 (med13b)
Transcription machinery [BR:
scep03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
307166804 (med13b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Motif
Other DBs
NCBI-GeneID:
307166804
NCBI-ProteinID:
XP_079741593
LinkDB
All DBs
Position
11:complement(14495607..14528215)
Genome browser
AA seq
2104 aa
AA seq
DB search
MMSSCFVPNGASLEDCHSNLFCLADLTGIKWKCFVWQGPTSSPILFPVTEEDPILCSFSR
CLKADVLSVWRRHQTPGRRELWIFWWGDDPNFAELVHHDLSCNEDGSWDSGLTYECRTLL
FKAIHNLLERCLMNRSFIRIGKWFVKPYEKDEKPINKSEHLSCSFTFFVHGDSNVCTSVE
INQHQPVYLLSEEHLTLAQQSSSSVQVILSPYGLSGTLTGQSFKLSDPPTQKLIEEWKQF
YPIGPNTKEVTEDKMDDLDWEDDSLAAVEVVVAGVRMVYPANLVLVAQSDIPVMATVSSS
TSLGSYSGGQHSQMVHGDTGISSVTLTPPTSPEEAQAVSQPAQKLVKLSAMSGAFSVDSS
SHHGGKIPRRLASQMVERVWQECNVNRAQNKRKFSTMSNGACEEETDKASVWDFVESSQR
SQCSCSRLKNQKQRACSTPGLPPSAGQPPQPSTKHKMAEKLEKGDKQQKRPQTPFHHRSS
LCEEHPNLEQGEGVHRLCLQGHEDSRYPSLLHADVTSSKTPMLHSSADEMTGSPQPPPLS
PHPCERGEDANDGLKSSSSPLHQHFYPPSSEPCLVPQKPPDDSPLDPLPLACPPPYPESL
EATVYMGSAINPNEDMSHNPWKYFRVPGGKNADFHTPHLPVVTLFEDGNRAGSQDGVVSV
TELMSSSKRPLKVSEELVKMYEHKKNQYLSAAVCNENQERESDPYAFVEGDEDFMFSDKD
KKPGPERETGKRNKRDDDSLSSDDAQGSGGGKPLPTTSLIHETDLVVSINDLDNLFNSDE
DDLTPGSRRAAGGAEEKFGGKEPKPAAPDPLPCSADLHQMFPTPPSLEQGYSPINMGNTE
SAAGLSLLDGAISGNFKMEVEEGFCSPRPSEIKDFSYVFKTESCQALIGCSLYAPLKMLP
SQCLLPIKLPEECIYRPSWTVGKLEMLHPMAAMTFLHKDSNIPSVGSAVEQDQSCTPQTH
NTFMSNSAPPSNSGAGILPSPATPRISAPTPRTPRTPRTPRGPASVQGSLKYENSDLYSP
ASTPSTCRPLNSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCICVCNMNITG
ADVGVYISDPNMDSQYSSMDPCSCGFSAVMNRRYGNGAGLFLEDELDIMGRGSDAGRETE
KHFEAVRAASLQRGAVLKEQVPDDLVLLLQDLCTNPFSPIIRPQLLSTSFKPPMRLEERD
YYSDCYLALEHGRQFMDNMSGGKVDETLVKSSSLHHWAKRNAFDMSMLFSQDVVRMLLSL
QPVLQDTIQKKRSVRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTLLVGYEYDYV
VLSPFALPYWEKLLLDPYSSQRDIGYMVVCPDNETLLNGAKTFFRDLTAVYESCRLGQHR
PIAKSHADGIVTVSDTGSQPFTDQTFTDWLPKTINSSSEAFNKLRLYAQVCRQDLVSCLA
SQSLDGSLLSQRNPTSSSQTSSSSSPTTVTQNTTPTTNSTSNTNPTTATATTTTTSTTAS
SCSQGIGTLPSSKPNSLPSFGAQGLQSSQPSSGQSAGTLGDGSSTTSQPQVQSEPPESTM
DREKVGVPTDGDSHAVTYPPSIVIYIVNPFSYEETGQGGNSSVWTMGLLRCYLEMLQFLP
PHIRNAVYVQIIPSQYLLQPVWSEERHIYAQHLKSLAFSVYTQCRRRLPTSTNVKTLTGF
GPGLAIDTALQSKERPECLHLYAPPFILAPVKDKQTELGETFGEAAQKYNVLFVAYCLSH
DQRWLLASCTDQYGELLETCIISIDVPNRARRKKGSSRRQGIQKLWEWCLGLVQMTSLPW
RIVIGRLGRIGHGELRDWSILLSRRNLQSLGRRLKEMCRMCGISAADSPSILSTCLVAME
PQASFVIMPDSVSTGSVFGRSTTLNMQTSQLNTPQDTSCTHILVFPTSAGLQAFNPNNDV
TDGMGGMDGILDLLSENDLVDPDLINILPNSPTTSPVQSPGSHYHHGGDGSKGQSTDRME
SHDESPNILQQPMALGYFVSTAKAGPLPDWFWSSCPQAKNQCPLFLKASLHLNVSSVQSD
ELLHSKHSHPLDSSHTSDVLRFVLEQYNALSWLTCDPATQDRRSCLPVHFVVLNQMYNFI
MNML
NT seq
6315 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttcttgttttgtacccaacggggcgagcctggaggactgccactccaatcta
ttctgtctggctgacctcacggggattaaatggaagtgttttgtatggcagggccccacc
tcgtcccccatcctcttcccggtgacggaggaggaccccatcctgtgcagcttcagtcgc
tgcctgaaggcagacgtgctgagcgtgtggcggaggcaccagaccccgggccgacgggag
ctctggatcttttggtggggagacgaccccaactttgccgagctcgtccaccatgaccta
tcatgtaatgaggacggttcatgggatagcggcctgacctacgaatgccgaacgctgctc
ttcaaagccattcataacctgctggaacgctgcctcatgaacagatccttcatccgtatc
ggcaagtggttcgtcaaaccctacgagaaggatgagaagcccatcaataaaagtgaacac
ctgtcctgctccttcacattcttcgtgcatggagacagtaacgtgtgcaccagcgtggag
attaaccagcaccagcctgtctacctgttgagtgaggagcacctgacattggcccagcag
agcagcagctcggttcaagtgatcctttctccgtacggtttgagtgggactctgacgggc
cagtccttcaagctctcagacccaccgacccagaagttaatcgaagaatggaagcagttc
tatcccataggccccaacaccaaggaggtcactgaggacaagatggatgaccttgactgg
gaggatgattccttggctgctgttgaagttgttgttgctggggtcaggatggtgtaccca
gcgaacctggtgctggtggcccagtcggacatcccggtaatggccacggtgagctcttcc
acctccttgggttcttactcaggaggtcagcacagtcagatggtccatggagatactggc
atctcttcggtcactctgactcctcccacttcacctgaggaggctcaagcagtctctcag
cctgcccagaagttggtgaaactctcggctatgtcaggcgcctttagtgtggacagcagc
agtcaccacggaggcaagatcccccgccgcctagccagccaaatggtggaacgagtctgg
caggagtgcaatgttaaccgagcccagaacaagagaaagttttcaaccatgtctaacgga
gcttgcgaggaagaaacggacaaagcttctgtttgggactttgtagagtcatctcaaagg
tcacagtgcagttgctcaaggcttaagaaccagaaacagcgggcatgtagcaccccaggg
cttcctccatctgctgggcaacctcctcagccatctaccaaacataagatggcggagaag
ctggagaagggggacaagcagcagaagaggccccagacgcctttccaccaccgtagctct
ttatgtgaagaacatcctaacttggagcagggggagggtgttcacaggctttgtctgcag
ggccacgaggacagccgctatcccagcctcctccacgccgacgtcacctccagcaagacc
ccaatgctgcacagctcagctgacgagatgaccggctcccctcagcccccgccacttagc
ccgcacccttgcgagcgcggagaggatgccaatgacggcctaaagagttcctcctcgccc
ttgcaccaacacttctatcctccatcctctgagccctgcctggtgccccagaaaccccca
gatgattctccactagacccattgcccttagcctgcccacctccatacccagagtcccta
gaagccaccgtatatatgggctccgctataaaccccaacgaggacatgtcgcataacccc
tggaagtactttagggtgcctggagggaagaatgcagatttccacacacctcatcttcct
gtggtcacgctctttgaggatgggaacagggccggaagccaggacggtgttgtctcagtt
acagagcttatgtcctcctccaaaaggccactgaaggtgtcggaagagctggtgaagatg
tacgaacataagaaaaaccagtatctttctgcagctgtgtgcaatgaaaaccaggagcga
gaatctgatccttacgctttcgtggaaggagacgaggattttatgttctctgataaagac
aaaaagcctggacccgagagggagaccggaaagagaaataagagggatgatgacagttta
tcttctgatgatgcccaggggtcaggtggaggtaaaccacttcctaccaccagcttgatc
catgagaccgatctggttgtgtccattaatgacctggacaacctctttaactctgacgag
gatgacctgacgcctggatccaggagagctgctggtggagcagaggaaaaatttggtggg
aaagaaccaaaacctgctgcgcctgaccccctgccttgctctgcagacctgcaccagatg
ttcccaacccctccgtcactggagcagggctactctcctataaacatgggcaatacagag
tcagctgctggcctgtctcttctggatggggccatcagcgggaacttcaagatggaggtg
gaggagggtttctgtagccctagaccctcagagattaaggacttctcctacgtctttaag
actgagtcctgccaagccctcatcggctgctccctttacgcccctctgaagatgctgccc
agccagtgtctgcttcccatcaagcttccagaagagtgcatttacaggcccagctggaca
gtcggcaaactggagatgctgcacccaatggcagccatgaccttcctccacaaggacagt
aacatccctagtgtgggaagtgcagttgaacaggaccagagctgcacccctcagacacac
aacacctttatgtccaacagcgccccacccagcaacagcggcgctggcatcttgccctcc
cccgccacccctcgaatctctgccccaacgccacggacaccccggaccccacgcaccccc
agaggccctgccagcgtccagggctcactgaaatatgagaactccgacctctactctccc
gcctctacaccctccacctgcagacctttaaattcagttgagccggccaccgtgccctcc
atcccagaagcgcacagcttatacgtcaccctcatcctctccgagtcagtcatgaacctc
ttcaaggactgcaactttgacagctgttgcatctgcgtctgcaacatgaacatcacaggg
gcggatgtgggcgtctacatcagtgatcccaacatggactcgcagtactcaagtatggac
ccctgctcctgcggttttagtgccgtcatgaaccgtcgctatggcaacggggccggcctc
ttcctggaggatgagctggacatcatgggacggggttcggatgccggacgggagacagag
aagcactttgaggctgtacgtgcagcctcgcttcagagaggggcggtccttaaagagcag
gtcccggatgatctcgtccttctgctgcaggacctgtgcacgaaccctttctcccccatc
atcaggccccagctactcagcaccagtttcaagccgcccatgcgcctggaggagagggac
tattacagtgactgctacttggctcttgagcacggcagacagttcatggacaacatgtca
ggaggaaaagtcgatgagacactggtcaagagctcctctttacaccactgggccaaacgc
aacgctttcgatatgagcatgctgttctcccaggatgtggtgaggatgctgctgtcactt
cagcctgtcctgcaggacaccattcagaagaagaggtctgtgcgctcttggggggtccag
ggccccctcacctggcagcagtttcacaagatggctggcaggggatcgtacggcacggat
gaatctccagagcccctccccatccccaccttactggtgggttatgagtatgactatgtg
gtgctgtctcctttcgctctgccatactgggagaagcttctgctggacccgtacagctcc
cagagggacatcggatacatggtggtgtgtcccgacaatgaaactctgcttaatggagcc
aagactttcttcagagacttgacagcagtatatgagtcctgtcggctcggtcagcacagg
cccatagccaagtctcacgctgatggcattgtgactgtgagtgatactggatcccagcct
tttacagatcagactttcactgactggctcccaaaaaccatcaacagcagcagcgaggct
ttcaacaagctcagactttatgctcaagtgtgccgacaagacttggtgtcctgtctggca
tcccagtctttggacggctcactgctttcccaacgaaaccctaccagctcttcgcaaact
tccagctccagcagccccaccacagtcactcagaacaccacccctaccaccaacagcacc
tccaacactaaccccacaaccgccacggcgaccaccaccaccacatccaccaccgcttcc
tcctgctctcagggcataggtaccttgccgtcttccaagcccaattccctgccttccttt
ggggctcagggcttgcagtccagtcagccaagcagcggtcagagtgcagggacactgggg
gacggctcatcgaccaccagccaacctcaggtccagtctgagcccccagagagtacgatg
gatagagagaaggtgggggtgccgactgacggagactcccatgccgtcacttatcctccc
tccatagtgatttacattgtgaaccccttcagctatgaagagacaggccaagggggcaat
tccagtgtgtggacaatgggtcttctccgctgttatctggagatgcttcagtttcttcct
cctcacatcaggaatgctgtatatgtccaaattatacccagccaatacttgctgcagccg
gtctggagtgaggagcgccatatatacgcacagcacctgaagtctctggctttctcagtt
tacacacagtgcagacggcgtctgccaacctccactaatgtcaaaacgctaacaggcttt
ggccccggtctggccattgacactgcactacagagcaaagagagaccagagtgtttacat
ctctacgcaccgccattcattctggcaccagtgaaggacaaacagacagagctgggtgag
acttttggagaggctgcgcagaaatacaatgtgctgtttgtggcctactgcctgtcacat
gaccagaggtggctcctggcctcatgcactgaccagtacggagagctgctggaaacctgc
atcatcagcattgacgtacccaacagagctcggaggaaaaagggctcttcacgacgacag
ggcattcagaagctttgggaatggtgcctgggtcttgtacagatgacttcacttccttgg
cgcattgtgatcggccggcttggaaggataggtcacggggagttacgtgattggagtatt
ttgttgagtaggcgaaacttgcagtctctcggtagacgactgaaggaaatgtgcaggatg
tgcggtatctctgctgcggacagtcccagcattctcagcacatgtctagttgcaatggaa
ccacaggcttcctttgtcatcatgccagactctgtgtccacgggctccgtgtttggccgc
agcacgaccctgaacatgcagacgtcccagttaaacactcctcaggacacctcctgcact
cacatcctcgtgttccccacttctgccggcctccaggcgttcaatcccaacaacgatgtc
acagatggaatgggtggcatggatgggatcttggacttgctgtcagagaatgatctggtt
gaccccgatctcattaacatattacccaactctcccaccacctccccagtacagtcacca
ggctcacattaccaccacggaggagatggcagcaagggccagagcacagacaggatggag
tcgcacgacgaatctcccaacatcctccagcagcccatggctctgggctactttgtgtcc
acagctaaagcgggtccactgcctgactggttctggtcctcctgcccacaggcaaagaac
cagtgtcctctcttcctgaaggcttctctgcaccttaatgtttcgtcagtgcagtcagat
gaattgctgcacagtaaacactcccaccctctcgactccagccatacctcagatgtgctc
agatttgtgctggagcagtacaatgccctctcgtggctgacctgtgacccagcgactcag
gaccggcgctcttgtctccccgtgcactttgttgtgctcaaccaaatgtacaacttcatt
atgaacatgctctaa
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