Squalius cephalus (European chub): 307167028
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Entry
307167028 CDS
T11930
Symbol
atg16l2
Name
(RefSeq) ATG16 autophagy related 16-like 2
KO
K20868
autophagy-related protein 16-2
Organism
scep Squalius cephalus (European chub)
Pathway
scep04140
Autophagy - animal
scep04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
307167028 (atg16l2)
04140 Autophagy - animal
307167028 (atg16l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scep04131
]
307167028 (atg16l2)
03029 Mitochondrial biogenesis [BR:
scep03029
]
307167028 (atg16l2)
Membrane trafficking [BR:
scep04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
307167028 (atg16l2)
Others
Specific organelles associated proteins
Auto phagosome
307167028 (atg16l2)
Mitochondrial biogenesis [BR:
scep03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
307167028 (atg16l2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_IFT122_1st
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
ATG16
WD40_MABP1-WDR62_2nd
DSE1_N
WDR90_beta-prop_4th
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
CFAP251_N
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_NOL10_N
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_NWD2_C
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_ACSF4
Ge1_WD40
Beta-prop_DCAF12
PAC11
Beta-prop_Nup120_160
Beta-prop_Vps41
Tricorn_N
Spectrin-like_SYNRG
Motif
Other DBs
NCBI-GeneID:
307167028
NCBI-ProteinID:
XP_079742023
LinkDB
All DBs
Position
11:complement(32706249..32750402)
Genome browser
AA seq
589 aa
AA seq
DB search
MIMAALQRARNSELKQSETWKRHIIRQLKHRNRTQTSVFQDIIESYHSLLEKSKQRAFIT
KGILGSGSRPSAAPSSEDSLTSLKTTTGELAYQVVELQQRLQMKDVTLDEQHTKLYEVEK
HLSLLASEHRVLQERVAEVQTGNRLLKQNYDSLLEQHQNTERTYRQEKLHSSEILENMIQ
LKQQAAVRMNHRNEKRVRAREASIHKELQMAASKNVNINEESGNVSPSEPSSPKCETAER
SHGPLFRSASATSPRIFSSIKGLFERKIRGKSVCRSEEDLFIPLGVCLVARVPTKAIYSL
DAHELGINAVRFSTSSNLLATGGTDRVIKLWDIEAGTLQNRATLDGSNEGITSIEFDPTG
TRILAASYDKSALFWRLEDSVPKVTLTGHSRKVTAAKFKYSQRQVVTGSADRTVKIWDLQ
RAACIQTIEVLSFCSDVVCSEYLIISSHYDRKIRFWDSRAATCTQEVPLQGIGTSLDLCP
NHRQLLSCSRDDILQLVDLRKSNDRVAFRAEGFKCGSDSTKAIFSPDGSFLAAGSADGAV
YIWNVNTGNLEKRLPDMHSAPISAVAWSLSGEYVVSVDKSRRAVLWSDI
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggctgcgttgcagcgcgcgagaaactctgaacttaaacagagcgaaacatgg
aagcgtcacattattagacagctgaaacaccgcaacaggacacagacgagcgtcttccag
gacattatagagtcatatcacagtttgctggagaagtccaagcaaagagccttcataacc
aaaggcattctgggatcagggtcaaggccctcagcggccccctcatctgaagattccctg
acgtctctaaagacgaccaccggtgagcttgcataccaagtggtggaactgcagcagcga
ctccagatgaaggacgtgacactggatgaacaacacaccaagctgtatgaggtggaaaag
catctcagtcttctggcctcagagcacagggtgcttcaggaacgcgtggctgaggtgcag
accggaaaccgactcctgaaacaaaactatgactctctgctggagcagcaccagaacacg
gagaggacgtaccgacaagagaaactccacagctccgagatcctggagaacatgatccaa
ctaaaacagcaggctgctgtccgcatgaaccatcgtaatgagaagagagtgagagccaga
gaggccagtattcacaaagagcttcagatggctgccagtaagaacgtgaatattaatgaa
gagtctggaaatgtgtcaccatccgaaccatcgtcccccaaatgtgaaactgcagagaga
tcccatggaccacttttcaggtctgcttcagctacgtccccgcgcatcttcagctccatc
aaaggactcttcgagaggaagatcagaggtaaatcagtctgcaggtcagaggaagatctc
tttatcccattaggagtctgtctggttgccagagtcccaaccaaggcaatttattcactg
gatgctcatgagctgggaatcaacgctgtgcggttcagcaccagttcaaacctgttggct
acaggagggactgacagagtcatcaaactgtgggacattgaagcaggtactcttcagaac
agagcgacgttagatggaagtaatgagggcatcaccagcattgagttcgaccctacgggc
actcggattttagctgcgtcatatgacaagtcagcgctattttggaggctagaggacagc
gttcccaaggttacattgacgggtcattctcgtaaagtgacagcagccaaatttaaatac
agtcagaggcaggtggtcacgggcagtgcggacaggaccgtcaagatatgggacctccag
cgagcagcgtgcatacaaaccattgaggttttgtctttctgtagtgatgttgtgtgctcc
gagtaccttatcatcagtagccattatgacagaaaaatacggttttgggacagcagggca
gcgacctgcacgcaggaagtgcctcttcagggcatagggacatcattggacctctgccct
aaccacaggcagttgctcagctgctcccgggacgacatcctgcagctggttgacctgaga
aagagtaacgacagggtggccttcagagcagagggcttcaaatgtggaagtgacagcacc
aaggccatcttcagtccggatggcagtttcctggcagctggctctgcggacggtgccgtg
tacatatggaatgtgaacacaggaaacctagaaaaacggcttccagacatgcacagtgct
ccaataagcgctgtagcctggtcgttgtcgggcgaatacgtggtaagcgtggacaagagc
cgtcgagctgtgctctggagtgatatctga
DBGET
integrated database retrieval system
