Squalius cephalus (European chub): 307168246
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Entry
307168246 CDS
T11930
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
scep Squalius cephalus (European chub)
Pathway
scep03008
Ribosome biogenesis in eukaryotes
scep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
307168246 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
307168246 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scep03021
]
307168246 (xrn2)
03019 Messenger RNA biogenesis [BR:
scep03019
]
307168246 (xrn2)
03009 Ribosome biogenesis [BR:
scep03009
]
307168246 (xrn2)
03016 Transfer RNA biogenesis [BR:
scep03016
]
307168246 (xrn2)
Transcription machinery [BR:
scep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
307168246 (xrn2)
Messenger RNA biogenesis [BR:
scep03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
307168246 (xrn2)
Ribosome biogenesis [BR:
scep03009
]
Eukaryotic type
Pre-60S particles
RNases
307168246 (xrn2)
Transfer RNA biogenesis [BR:
scep03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
307168246 (xrn2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Se_S_carrier
Motif
Other DBs
NCBI-GeneID:
307168246
NCBI-ProteinID:
XP_079744125
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All DBs
Position
12:complement(34457648..34494618)
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AA seq
942 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIVVHCLEEKAKEYNGIKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEAVELVEEKEKMREEVIQRGGYLPPEGIKERFDSNCITPGTEFMDNLAKCLRYYVSD
RLTNDPGWRNITVFLSDASVPGEGEHKIMDFIRRQRGQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCALCSQMGHEIKDCQGLAREKQGEHDEFADKIPVSEQE
FIFIRLAVLREYLERELTMASLPFPFDFERSVDDWVFLCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTENGFVHLERVELIMQAVGVAEDNIFKKRKDDDESFKRRMKE
KKKRMKAQQGPSFVPRGQFAPQALGSRDRPMAVQNARHAAYEMRMQGNQRNQEAAQSLRA
MIKNGKSVAETSDSVDTRGVKRKAEDSDSEPEPEDVVRLWEDGWKQRYYKTKFDVDATDD
DFRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFSDFEKGTKPF
KPLEQLMSVFPSASGNFLPTTWRALMTDPESSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLRAALAEVYPELTPEEVRRNSLGSDVLFVGKSHPLCDFIQELYRAESHEATEIPA
EFCHGIQGILNLDEDPILPDKPVESPIPTLRDIRSSCAIGIKFQDPQYDDGFVFKAVILP
GAKIPSKVLKPGDFEQSNRGRSWRPQLGFNPNRQQAHLDQSGFRKLNHHVGMNQGAGHFG
RGQSFEGQHSGGQYSNAPPPRNYNQGNYRPPRGNYPQNQYSWQTPASSTPYTRFQQGAQG
WDQSYQQSQQSQQRGRGGWRPAHGQQDHRGGGGGGGGRYNWS
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcttttttccgctggttgagtcggaagtatccgtcgatagtagtacac
tgtctggaggagaaggccaaggagtacaatggaattaaaatcccagttgataccagcaaa
ccgaacccaaatgaagtggagtttgacaacctgtatctagacatgaatggaattattcac
ccgtgcacacatcctgaggacaagccagcacctaaaaatgaagatgaaatgatggttgcc
atttttgaatacattgaccgtctctttaacattgttcgaccgagacgggttctgtacatg
gcaattgatggtgtggctcctcgtgccaaaatgaaccagcagcgttcaagacgtttccgg
gcatctaaggaagcagtggagcttgtagaggaaaaagagaaaatgagagaagaagttatt
cagagaggtggttacctgccacctgagggcattaaagaacgttttgacagtaactgcatc
acccctggaaccgagttcatggataatttggccaaatgtttgcgatattacgtctcagac
agactgaccaatgatcctgggtggcgcaatatcacagttttcttgtcggacgccagtgtt
cctggtgaaggagagcataaaattatggatttcatcaggagacagagaggtcagccaaat
cacgacccaaacacgcatcactgtctctgtggagctgatgctgatttgataatgttgggt
ttggcgacacatgagcccaactttaccattataagagaagagtttaaacccaaccaaccc
agaccctgcgccctgtgtagtcagatgggccacgagatcaaagactgtcagggactggcc
cgagagaaacagggcgagcatgatgaatttgcagacaaaattccagtatcagaacaggag
ttcatattcatccgactggctgtgttacgagagtatctggagagggagttaacgatggcc
agcctgccgttcccatttgacttcgaacgaagcgtcgatgactgggtgtttttgtgtttc
tttgtgggaaacgacttcttgccccacttaccatctcttgagatcagagagggcgccatt
gatcgtctggttggcatctacaaagatgttgttcataagactgggggctacttaacagaa
aacggctttgtccatctcgagcgagtagagctcattatgcaagccgtaggggtggccgag
gacaacatcttcaaaaagcgtaaagacgacgatgagagttttaagcggagaatgaaggaa
aagaagaaacggatgaaagcgcagcagggtccatcgtttgtccctcgtggtcagtttgcc
cctcaggccctgggcagcagagacagacccatggcagtgcagaacgccagacatgccgcg
tatgaaatgaggatgcagggcaaccagcgcaatcaggaagcggctcagtccttgagagcc
atgatcaaaaatgggaagagtgttgctgaaaccagtgacagcgtggatactcgtggtgtg
aaacgtaaagccgaggacagtgacagcgaaccagaaccagaagatgtcgtccggttatgg
gaggacggctggaaacagcgttactacaaaaccaaatttgatgtggatgcaacagacgat
gattttcgtaagaaagtggtgaagtcgtacgtggagggcctgtgctgggtgctcaggtac
tactatcagggttgcgcatcctggaagtggtattttccctttcattatgctccgtttgcc
tccgacttcaaagacatcaagggcatgttcagcgatttcgagaaagggaccaaaccgttc
aaacctttggagcagctcatgagtgtatttccttctgccagtggaaactttctgccgacg
acatggagagctctgatgactgacccagagtcctcaatcattgatttctaccctgatgac
tttgccattgatttgaatgggaagaaatacgcctggcagggtgttgctttgttaccgttt
gtggacgagcggaggttacgcgcagcgttagcagaggtctaccctgaattgaccccagag
gaggtgagaaggaacagtctgggaagtgatgtcttgtttgttgggaagtcccaccccctg
tgtgatttcatccaggaactctaccgtgcagaatctcatgaggccactgagatccctgca
gaattttgccatggaatccaaggtatattaaatctagatgaagaccctattctaccagat
aaaccagtggagtcacccatcccaacactgagagacatccgcagcagctgtgctatcgga
atcaaatttcaggatccgcagtatgatgatggctttgtgttcaaggctgttatcctgcca
ggggcaaagattcctagcaaggttctgaaacctggtgactttgaacagagtaaccgtggc
cgatcatggagacctcaactgggattcaacccaaaccgccaacaagcccatctggaccaa
tccggtttcagaaagctcaatcaccatgtgggcatgaatcaaggggcgggtcattttggc
cgtggccagtctttcgagggtcagcatagtggcggtcagtacagcaatgccccgccaccc
agaaactacaaccaaggaaactaccgtccaccccgaggcaattaccctcaaaaccagtat
tcctggcagactccggccagctccacaccgtacaccaggttccagcagggagctcagggc
tgggatcagtcgtaccagcagagccagcagagccagcagagaggacgaggaggctggaga
cccgcgcacggccagcaggaccaccgcggaggaggaggaggaggaggaggacgctacaac
tggagctga
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