KEGG   Squalius cephalus (European chub): 307170334
Entry
307170334         CDS       T11930                                 
Symbol
kdm4b
Name
(RefSeq) lysine-specific demethylase 4B
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
scep  Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:scep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:scep03036]
    307170334 (kdm4b)
Enzymes [BR:scep01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     307170334 (kdm4b)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     307170334 (kdm4b)
Chromosome and associated proteins [BR:scep03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    307170334 (kdm4b)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 PHD_2 zf-HC5HC2H JmjN PHD DUF4537 53-BP1_Tudor Tudor_5
Other DBs
NCBI-GeneID: 307170334
NCBI-ProteinID: XP_079747558
LinkDB
Position
13:35603000..35667991
AA seq 1143 aa
MDRSLPPDLNPEALAKPEPALDMTPQAETAQDSPVEPDMDSSPQPCEEPVSDPAQEPTTE
PAPEIKQEPSAPEITPEPPIPEPRIPDPAPPPAANSSYKIMTFRPTMEEFKDFGKYMAYI
ETQGAHRAGLAKVIPPKEWKPRRSYDTIEDMVIPAPIMQVVTGQSGLFTQYNIQKKSMTV
GEYRKLANSKKYCTPQHKDFDDLERKYWKNLTFVSPIYGADVSGSIYDPEITEWNIGHLN
TLLDMVEQECGIVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGQPKSWYAIPPE
HGKRLERLAQGFFPGSSQGCDAFLRHKMTLISPSILKKYSIPFDRITQEEGEFMITFPYG
YHAGFNHGFNCAESTNFATLRWIDYGKMATQCTCRKDMVKISMDVFVRCLQPDRYDQWKQ
GKDVTVLDHQKPTSLTSPELEHWRKNRVTYREKLLRRSQAKVKQFRRLKLEEVKVLAEEG
VELDMSEYMRKVEEREEQRRQQRDERMAKEAMLTLEALEREEQEQAEAEAALRGGGEDGK
TDLQDPPPENGEKKKRKKKKPKHPDEISFQQAFEQFASVNEMQTQNNGADPLSGLQPSPF
TKLKKKVEVKKSRRHPLSKPPMRSPHSIVKQENSSDEELYSGLAASGGSAPETKKDLWQN
LLQNCLPNFLAEKQFNAAMATIEPHCAVCTLFCPYTQPVKDSFHVSDTSRVGCRTRPLVP
EMCFSAGAENTEPLPSNSHIGDDGTSVLLSCGSCGLQVHASCYGVNPETKQEDWMCSRCT
SMEWTAACCLCSLRGGALKKTTDDRWVHVICAVAVAEARFVSAVEREPVDVTSVPDTRKS
LKCVYCHKTTKQIFGACIQCSSDNCSTSFHVTCALLAGVAMKPADWPYVVSVTCHKHKHA
NQKVKSSSRELSLGQEVIGRSSNGWFYRCTITGIGTQNYYEVNFDDGSYCDNVFPENLLS
HDCLRNGPPEQGEIVVVKTIDGRILNASFVKEHVHRSYQVEFHDETQILLKRSEIHSLNQ
ELPKRVLSRLASVNQQQPQAQPSDEPLAAKRPRLPTPPPTLAIEPSALPSELITTFLPAS
ITPNTSNPPCLPPASLPVSAPTLPVPEPSESYTHSSSYIAYMESLLNTDFPPEEDEQGVE
PMY
NT seq 3432 nt   +upstreamnt  +downstreamnt
atggaccggtctttacctccagacctgaaccccgaggccctcgcaaaacctgaacccgct
ttagacatgactccacaagcagaaactgctcaggattcgccagtagaaccagacatggac
tcgagtccacagccatgcgaggaaccggtttcagatccggcccaggaaccgaccacagaa
ccggccccagaaataaagcaagaaccatcggcaccagaaatcacaccagaaccaccaatc
ccagaacctcgaatcccagatcccgctcctcctccagcggcgaactcctcctacaagatc
atgaccttcagacccaccatggaggagttcaaggacttcgggaagtacatggcttacatc
gagactcaaggagctcatcgtgcgggtctggcaaaggttattccaccgaaagagtggaag
ccacggcgttcctacgataccattgaagacatggtcattcctgctcccatcatgcaagtg
gtgaccggccagtcgggactcttcactcaatacaacatccagaagaagtccatgacggtc
ggagaatatcgcaaactggccaatagtaaaaagtactgcacacctcaacacaaggacttt
gatgacctggaaaggaagtactggaaaaacctgacgtttgtctcgcccatttacggtgcc
gatgtcagcggctccatctatgacccggagattacggagtggaacatcggccatctaaac
actcttctggacatggtggagcaggagtgtgggatcgtcatcgagggagtgaacacaccg
tacctgtacttcggcatgtggaaaaccacctttgcgtggcacacggaggacatggacctc
tacagcatcaactacctgcatttcggccaaccaaagtcctggtatgcgattcctcccgag
cacggcaagaggttggagaggctggcacaaggtttcttcccgggaagttctcagggctgc
gacgcgtttctccggcacaagatgaccctcatttctccatccatcctgaagaagtacagc
atcccgttcgacagaatcactcaagaagagggcgagttcatgatcacgttcccgtacgga
tatcacgccggattcaaccacgggttcaactgcgcggaatccaccaacttcgcaacccta
cgatggatcgattacggcaaaatggccacgcagtgcacgtgccgtaaggacatggtgaag
atctccatggacgtgtttgtgcgctgtctgcagcccgatcgctacgatcagtggaaacag
gggaaggacgtcacggtcctggaccaccagaaacccacgagcctcaccagccctgagctg
gagcactggaggaaaaacagagtcacgtaccgagagaagctcctgcgcaggtctcaggcg
aaggtgaagcagttccggcgcctgaagctggaggaggtgaaggtgctggcggaggagggg
gtggagctggacatgagcgagtacatgcggaaggtggaggagcgcgaggagcagcggcgg
cagcagcgggatgagcgcatggcgaaggaggcgatgctcacgctggaggcgctggagagg
gaagagcaggagcaggccgaggccgaagcagcgctccggggaggaggtgaagatggaaaa
acagatttgcaggatcctccgccggaaaatggagagaagaagaagaggaaaaagaagaag
ccgaagcatcccgacgagatctccttccagcaggcgtttgagcagttcgcttcggtgaac
gaaatgcaaacccagaataacggagccgaccctctgtccggcctgcagccgagtcccttc
acgaagctgaagaagaaggttgaggtgaagaagagcagaaggcatccgctcagcaagccg
cccatgcgttcgcctcactccatagtcaaacaagaaaactccagcgatgaggagctgtac
tcaggacttgcagcgagcggaggctcggcaccggagaccaagaaggatctgtggcagaac
ctgttgcagaactgcttgccgaacttcctcgccgagaagcagttcaacgcagcgatggcg
accatcgagccgcactgcgccgtgtgcacgctgttctgcccctacacacagccggtaaag
gactcgttccacgtctcggacacgtcccgggtcgggtgtcgaacccgtccgctggttccg
gagatgtgcttcagcgccggcgccgaaaacactgaacccctgccgtcgaactcccacatc
ggtgacgacggcaccagcgttctcctgtcctgtgggagctgtggccttcaggtccacgcc
agttgttatggagtcaatcccgagacgaaacaggaagactggatgtgttctcgatgtacc
tcgatggagtggacagccgcctgctgtttgtgcagtttaagaggaggagctttgaagaaa
accacagatgacaggtgggttcacgtgatctgtgctgtggctgtggccgaggctcgtttc
gtcagcgctgtggagcgagagccagtggacgtgacctctgttcccgacaccaggaagagt
ctgaagtgcgtctactgccacaagacgactaagcagatcttcggcgcgtgtatccagtgc
tcgtcggacaactgctccacatccttccacgtcacctgtgccctcctcgccggagtcgcc
atgaagccggccgattggccgtacgtggtgtccgtcacctgccacaaacacaaacacgcc
aatcagaaggtcaaaagcagctcgcgcgagttgtctctgggtcaggaggtcatcgggagg
agcagcaacggttggttttatcgctgcaccatcaccggcatcggcacgcagaactactac
gaagtcaactttgacgacggctcctactgtgataacgtctttccagagaacctgctgagt
cacgactgcctgcggaacggccctccagaacagggcgaaattgtggtggtcaagacaatc
gacggacgcattctcaacgcgtcttttgtcaaggaacacgtccaccgatcctaccaggtg
gagtttcatgacgagacgcagatcttactgaaacgcagtgagattcactctctcaaccag
gagctgcccaagagggtcttgtctcgtctggcatctgtgaaccaacaacaacctcaggcc
caaccgtcagacgaaccgctggccgcaaaacgcccacgtctgccgacacctccacccacg
ctagccatcgagccctcagcgctaccttctgaattaatcaccactttcttgcccgctagt
attactccgaacaccagcaaccccccttgcttgccacccgcatcacttcctgtctcagcg
cccacacttcctgtcccagaacccagcgagagttacacccacagctcaagctacatcgcc
tacatggagtctctcctcaacacggactttcctccagaagaggacgaacaaggcgttgag
ccgatgtattga

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