Squalius cephalus (European chub): 307171623
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Entry
307171623 CDS
T11930
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform 1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
scep Squalius cephalus (European chub)
Pathway
scep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
307171623 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scep03019
]
307171623 (clp1)
Enzymes [BR:
scep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
307171623 (clp1)
Messenger RNA biogenesis [BR:
scep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
307171623 (clp1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
TniB
CbiA
AAA_18
PduV-EutP
AAA_16
MMR_HSR1
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
307171623
NCBI-ProteinID:
XP_079749502
LinkDB
All DBs
Position
14:28603971..28608308
Genome browser
AA seq
445 aa
AA seq
DB search
MTAEAPEKSAEEGLSSSGSAGTSGTRFDLERETELRFEVETGERVHLELFSGMAEVFGSE
LNRNKKYTFGPGSKIAVFTWHGCTVALSGKTEVAYVSKDTPMMLYLNTHAALEQMRRQAE
KDNERGPRVMVVGPTDVGKTTLCRVLLNCAVRLGRRPTLVELDVGQSSISVPGTMAALCI
ERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSSLAEVFSQRCEVNRKASVGGCII
NTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRRESRDEKIREYFYGFRGTSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVSPGRDLTHHVLSVSSVEDETEVGAGQSRGILESPVCGFIVVTAVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagaagccccagaaaagtcagccgaggagggcctgagctcgtcgggcagtgct
gggacttcaggcacacgattcgacttggagagagagacagaactgcgttttgaggtcgaa
acaggagaacgagtccatctcgagctgttctccggtatggcagaggtgttcggatccgag
ctgaaccgaaataagaagtacacgttcgggccaggctctaagatcgctgtgttcacctgg
catggctgcactgtggcactttcaggcaagacagaggtggcttatgtgtccaaagataca
cccatgatgctgtatctcaacacccatgcagctctagagcagatgagacgtcaagcggag
aaagacaatgagagaggccctcgggtaatggtagtcggaccaactgatgtgggaaagaca
acattatgtcgagtgttgttgaactgtgctgtgcgactgggacgaagacctacgttggta
gaattggatgtcggccagagcagcatctctgtgcctggaaccatggcagcgctgtgcatt
gagcgtcctgctgatgtagaagaaggcttctctgtgcaggctccgcttgtctttcacttt
ggctccaccacaccaggaacaaacatcaaactttacaacaagctgacttcaagccttgca
gaagtgttttcccagcgctgcgaagtgaaccgcaaagctagtgtgggtggctgtataatc
aacacatgtggctgggtcaaaggttcaggctaccaggcactggtccactgtgcctccgcc
ttccaggtggatgttgttctagttctggatcaggagcgcctctacaatgagcttaaacgt
gacctgccacactttgtacgtgtcgtccttctgccaaaatccggtggcgtggtggaacgc
tccaaggactgccggcgagagtcacgggacgaaaagatccgggaatacttctatggtttc
cgtggaacttccttttaccctcacgcctttgatgtgcgcttttcagatgtgcgcatttac
aagattggtgcgccctctatcccagactcctgtctccccctgggtatgtctcaggacgac
acccagctcaaactcgtcccagtcagccccggcagggatttgacccaccacgtgctgagt
gtgagttcggtggaggatgaaaccgaggtgggtgcgggtcagagcagagggattctagag
agtccggtgtgtggctttatagtggtgacagcggtggacacacaagctcaagtgatgacg
gtactctcaccggcgcccagaccgctgccacgacacactctgctcatcatggacattcgc
ttcatcgaccttaaatag
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