Squalius cephalus (European chub): 307171934
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Entry
307171934 CDS
T11930
Symbol
gfap
Name
(RefSeq) glial fibrillary acidic protein
KO
K05640
glial fibrillary acidic protein
Organism
scep Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scep04131
]
307171934 (gfap)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
scep04812
]
307171934 (gfap)
Membrane trafficking [BR:
scep04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
307171934 (gfap)
Cytoskeleton proteins [BR:
scep04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
307171934 (gfap)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
Filament_head
FKBP15
DUF1664
Myosin_tail_1
ZK652
KASH_CCD
T4SS_LegC2C7
GAS
SPC25_N
PMD1-like
DUF7491
TolA_bind_tri
KLRAQ
BLOC1_2
TPR_MLP1_2
CLIP1
DUF4515
NET2A
Ninein_long_CC
Mua
PPP1R21_helical
T1-F
BRISC_FAM175B_helical
DUF4200
Prominin
Motif
Other DBs
NCBI-GeneID:
307171934
NCBI-ProteinID:
XP_079750005
LinkDB
All DBs
Position
1:39668059..39676839
Genome browser
AA seq
444 aa
AA seq
DB search
MEPQRAFSSYRKRFGTPGGSPSVGITSRLSTGRLSLHSSPRHLTSSPATMSTSRLSLGGE
RLDFSVDSLLKAQYRETRTNEKVEMMGLNDRFASYIEKVRFLEQQNKMLVAELNQLRGKE
PSRLGDIYQEELRELRRQVDGLNAGKARLEIEKDNLASDLATLKHRLQDETALRQEAENN
LNTFRQEVDEAALNRVQLERKIDALQDEINFLKKVHEEEMRELHEQLMAQQVHVDLDVSK
PDLTTALKEIRAQFETMATSNMQETEEWYRSKFADLTDAANRNGEALRQAKQEANEYRRQ
IQGMTCDLESLRGSNESLERQLREMEERFAMETAGYQDTVAHLEDEIHMLKEEMARHLQE
YQDLLNVKLALDIEIATYRKLLEGEESRITVPVQNFTNLQFRDTSMDTKLTPEAHVKRSI
VVRTVETRDGEIIKESTTERKDLP
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggaaccccagcgtgctttctcatcctaccgaaagcgcttcgggacaccgggcggctcc
ccgtccgtggggatcaccagccgcctcagcacgggccgcctgtccctccacagcagcccg
cgccacctcacctccagcccagccaccatgtccacctcacgcttgtccctgggcggggag
cggctggacttctcggtggactccctgctgaaggcccagtaccgggagacgcgcaccaat
gagaaggtggagatgatggggctgaacgaccgcttcgccagctacatcgaaaaagtgcgc
ttcttggagcagcagaacaagatgctggtggcagaactgaaccagctgagggggaaggag
cccagtcgtctgggggacatctaccaggaggagctgagggagcttcgcagacaggtggac
ggactcaacgctgggaaagccagactggagatagaaaaggacaacctggcctcagacctg
gccactcttaaacatagacttcaagatgaaactgccctacgacaagaggcagaaaataac
ctcaacaccttcagacaagaagtggatgaagcggctctgaaccgtgtacagctggagagg
aagattgatgctctgcaggatgagatcaatttcctgaagaaggttcacgaggaggagatg
agagagctgcacgagcagctgatggcccaacaggttcatgtggatctggatgtgtctaag
ccagacttaaccactgccctgaaggagatcagagctcagtttgagaccatggccacctcc
aatatgcaggagactgaggagtggtatcgctcaaagtttgctgatctgactgatgcagcc
aatcggaacggagaggctctgagacaagctaagcaggaggccaatgagtatcgtcggcag
attcagggcatgacctgtgacctggaatctcttcgtgggtctaacgagtccctggagcgt
cagctgcgagagatggaggaacgtttcgccatggagacggccggttaccaggacaccgtg
gctcatctggaggacgagatccatatgctgaaggaggagatggccagacacttgcaggag
taccaggacctactcaatgtaaaactggccctggacattgagattgccacctacaggaag
ctgctcgaaggagaagagagcagaatcactgttcccgtgcagaacttcaccaacttacag
tttagagacaccagcatggacactaagctgactcctgaggcacatgtgaagaggagcata
gttgtgcgaactgttgagactcgtgacggagagatcattaaagagtccactacggagagg
aaggatctgccctaa
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