Squalius cephalus (European chub): 307172010
Help
Entry
307172010 CDS
T11930
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform 1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
scep Squalius cephalus (European chub)
Pathway
scep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
307172010 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scep03000
]
307172010 (arid1aa)
03021 Transcription machinery [BR:
scep03021
]
307172010 (arid1aa)
03036 Chromosome and associated proteins [BR:
scep03036
]
307172010 (arid1aa)
Transcription factors [BR:
scep03000
]
Eukaryotic type
Helix-turn-helix
ARID
307172010 (arid1aa)
Transcription machinery [BR:
scep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
307172010 (arid1aa)
Chromosome and associated proteins [BR:
scep03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
307172010 (arid1aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
307172010
NCBI-ProteinID:
XP_079750123
LinkDB
All DBs
Position
15:complement(11865332..11886879)
Genome browser
AA seq
2319 aa
AA seq
DB search
MAAQVASATSLNTSPPSELKKPDRDPKEESVPGEKQQENKEPGLNSGSPARGELQDRADV
GNAGGGGESEMKNGNGNPSRVNNNQNETTGPEGNNHPGMVHHHAPGFQPASYSYAQHYGR
APFHQHGGQQSPGMAAAAGPGALSSSMMDSYQPNSHDHSFPNHQYNNYSPFGNRSPYPGQ
SYGMNSPRSAPQAQAVGGQSAKQQQQPTAAASYSNQRYNMGNPQPTSTPTLNQLLTSPSG
GRGYPNYPPSDFNSQDGVKGPADITLGSSSGQYGGGHPGWQQRTHHPPPMSPGSTGQPLG
RNQTPGSMDQMGKMRGQPYGSGGPYSQQPHQGPPSGPQQGPAYPGQGYGPPGPQRYPMGM
QGRMQYGQQMPSYGQQGPGGYVQQGQQPYYGQHGQGPHSGQQQSSYPQPSPGQPGSQAPY
SQQPHAPQSSGPHVQTGPPYQQPHMPQQPQGQMPGPSPGPSQSHSPYSQSSATSQSSQSP
YPQQQVPQSQPSQQGSSQAPPASQPQPQPSYPPGQGPQQQQPQPPPPSQQPPQTPTPASQ
QPAGHGQMPQGQPTSYSQNPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSPYQRFPP
PPQEISQESFSSQSSAPTSGPPLASKSSTEDMQGRPSSLPDLSGSIDDLPTGTEGALSPG
VSTSGVSSSQGEQSNPAQSPFSPHTSPPVGSPASASASRSGPLSPATMPVNQMPPRPSSG
QSDGIMHSSMSQPGMGQERGFIQRNPQMAPYGSPQSSSALSPRQSSGGQVHAGMVPYQQN
NSVANYGPQGGQYGPQGYPRQPGYSGMPNANYPGPGMGGSLNPMSGQGGGPLFAGMASGR
MPHGQMGARPFGPNMGPNMGPNMSPSMGPNMGNIPPQVGTGMCPPPGLNRKPQEAAAMQH
GPSNSIHNRLPGYTNMSPGPGMMGSGPPYGSSMNNMPGMMNTQGSPYPMGGNMSNNTSGM
SPGPDFAMDGKLNQAQKINNKVEGTPKTESKSKKSSSSTTTNEKITRLYELGPEPERKMW
VDRYLAFIEEKAMGMSNLPAVGRKPLDLFRLYMSVKEIGGLTQVNKNKKWRELATNLNVG
TSSSAASSLKKQYIQCLYAFECKIERGEDPPPEIISGDSKKNQAKIQPPSPAGSGSLQGP
QTPQSTSSSMAESGDLKPPTPASTPHSQMPPIPSGRSSVNLQDPFADSDFSRRSTMTPNS
GYQSGMSTPEMPVRMGPYEPNKDHFSGMRKVGEQFMSSGQGPNSSLGDQCNRGPQGPMGN
IPMGQRHQYPYGPGYDRRPESGMGTDGSMGPGVPQPNIMPSNAEPGMYSPNRYPPQQQRH
DSYSNQYPGQGAPPGGSYPNQQPGMYPQQQLNYKRPGDGSYPPAKRHHDGEMFSGPYNAQ
QPQPPPQAPPSGPSSGQQEMFNQYNSSYPGSERRPPGPQNQFPFPFGRDRMQAGTGPNSQ
GSMPPQMMGSPMQSGPDGPQAGMWPGRGDMGYPSYPNRQGPPAGPGQGPGYHTMNRSEDM
MSSEPRMNHDGQWPGPRQPPYGPGSAGPPMSRPLQSNYQSPQTMQNHIPQVSSPTPMPRP
MESRTSPSKSPYMPSNIKMQKVGPPVPASHIVPPSVQPPMMRRDLSFPPGSIEATPPVLK
SRRRLTMKKIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSISNFNLIQLPGFLE
LIVEYFRRCLIEIFGILREYEVGNPGQRALLDPSVLKKDEDTVDDEVLVEGMEEDGETEE
EDEGEEMHRLKHQEQHSAPLQIKQEEKPRMLDDSVKKEDCHGIEGELSAEPKTSEPPCLE
LAVAQEKPKQASKFDKLPLKIVRKKDPFVVDCSNKLGRLQEFDSGLLHWSIGGGDTTEHI
QTHFENKMDLLRQRKHLPAQFPDRKRGAQKDSQAPSLPSSSEEHRKEVDRQSLQSHPAAS
PESSTEKVTNGISDLREDRPADCLETVSEGTSHLEKDQEKKLSEATTPENIRPTPPSPSL
QGQRCIAILEDEPHSKDEAPLVTLSDWQDSLARRCLCVSNIVRSLSFIPGNDSEMSKHPG
LLLLLGRLLLLHHLHPERKQAPLTYEKEEELDESLGSKKDEWWWDCLELLRENCLVTLAN
ISGQLDFSVYTESICLPLLDGLLHWAVCPSAEAQDPFPSLGLNGALSPQRLVLETLCKLS
IQDNNVDLILATPPFSRLEKLFGNLVRLVGERKVPVCREMAVVLLANLAQGDSLAARAIA
VQKASVGNLLGFLEDSLAATQFQQSQGSLLHMQGSHFEPTSVDMMRRAARALLALAKVEE
NHSEFTLYESRLLDLSVSPLMNSLVSHVICDVLFLIGQS
NT seq
6960 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgctacctctctcaacaccagcccgccttccgagctgaaa
aaaccggatcgagacccaaaggaggagtcggtaccgggggagaagcagcaggaaaataag
gaaccgggactaaacagcggatctccggctcgcggggaactgcaggaccgggccgatgtg
ggaaatgctgggggaggaggggagtcggagatgaagaacggcaacgggaatccgtcgagg
gtgaacaataatcaaaatgagaccaccggaccggaggggaacaaccaccccgggatggta
caccatcacgcgcccgggtttcagccagcttcctatagctacgcgcagcactacggacgg
gccccttttcatcaacatggcggacaacaaagccctggcatggcagctgcagcggggcca
ggcgcgctgtcgagcagcatgatggactcatatcaacccaactcccatgatcacagcttc
ccgaaccaccagtacaacaactacagtccgttcgggaaccggagcccgtacccgggccag
agctacggcatgaactctccgcgcagcgctcctcaagctcaggcggtaggggggcagtca
gccaagcaacagcagcagccaacagcggctgcatcttacagcaatcagcggtataacatg
ggaaacccgcagccaacatccaccccgactctcaaccagctcctcacctccccgagcggt
ggtcggggctacccgaattacccaccgagcgacttcaacagccaggacggtgttaaggga
ccagcagatataacgttaggcagcagcagcgggcagtacggtgggggccatccgggttgg
caacaaaggacccatcacccgccacccatgagtcctggaagtaccgggcagcccctgggt
agaaatcagactccaggctccatggatcaaatggggaaaatgcgcggtcagccatatggg
tcaggtgggccttactcccagcagccccatcaagggcctccttcagggccccagcagggc
cctgcttacccaggccagggctatgggccccctggccctcagagataccctatgggcatg
caaggacgtatgcagtacggccaacagatgccatcatacggacagcagggaccagggggt
tacgtgcagcaggggcagcagccttattatggccaacatggtcaggggcctcactctggg
cagcagcagtcgtcatacccccagccttcccctggtcaaccaggaagtcaggcaccttat
tcacagcaacctcatgcaccccagtcatctggcccgcatgtacagactggccctccttac
caacaaccccacatgccccagcagcctcaggggcaaatgcccggcccatcgccgggcccg
tcccagtcccactccccgtactctcagtcctcagcaacatcccagtctagccagtctccc
tatccacagcaacaggtgcctcagtcccagccctcacagcaggggagctcccaggcccct
cctgcatcccagccccagccccagcccagctacccgcccggccaaggtccccagcagcag
cagccgcaaccaccaccaccatcacagcagccaccgcagacgccaacacctgcttctcag
cagcccgcgggacacggacagatgccgcagggacagcccacgtcatactcccagaatccc
ccacaacaacaacagcagcaacagcagcagcaacagcaacagcagcagcagcagcaacag
caacagcagcagcaacagcagcagcaacaacaacaatcaccgtatcagcgatttcctcct
cctcctcaggagatttcccaggagtcttttagctcccagtccagcgctccaacctccggc
ccgcctctggcatcgaagagcagcacagaggacatgcagggcagaccctccagcctacca
gacctatccggttctatcgatgacctacctactggtacggagggtgctctgagtcctgga
gtcagcacatctggagtatctagcagtcaaggagaacagagcaatccagcacagtcaccc
ttctccccccacacttctcccccggtgggctcgcctgccagcgcctcagcatctcgctct
gggcctctgtctcctgccacgatgccagtgaaccagatgcctccccgcccttcaagtgga
cagtctgatgggatcatgcactcttcgatgagtcaacccggcatgggccaagagagagga
tttatacagagaaaccctcagatggcaccctatgggtctccacagtctagctctgctttg
tctcctcgtcagtcatctggaggccaggtgcatgctggaatggttccttatcagcagaac
aactctgtggcaaactatgggcctcagggtggtcaatatggaccacaaggctaccccagg
cagcctggttacagtggcatgcctaatgccaattacccaggccctggcatgggtggatcc
ttgaatcccatgtctgggcaaggaggagggccactgtttgctggcatggcttctgggagg
atgcctcatggccagatgggtgcacgcccctttggccccaacatgggccccaacatgggc
cccaacatgagtcccagtatgggccctaatatgggcaacataccacctcaagtgggaacc
gggatgtgcccacctccaggcctcaacagaaagccgcaggaggccgcagcaatgcagcac
ggaccttccaactcaatacacaacagactaccaggttacaccaatatgtctcctggtcct
ggtatgatgggctcaggacctccgtatggctcctctatgaacaacatgcctgggatgatg
aacactcagggttctccctaccccatgggtggtaacatgtctaacaacactagtggcatg
tcccctggtccggactttgctatggatgggaaacttaaccaagcccagaaaataaataac
aaagttgagggcacacccaagacagaatcaaaatccaagaagtcaagttcctccacaaca
accaatgagaagatcactcggttgtatgagctaggcccagagccagaaagaaagatgtgg
gtagaccgttacttggctttcatagaggaaaaagccatgggcatgagtaacctgccagct
gtgggccgtaagccccttgatctcttccgcctctacatgtccgtcaaggagattggaggt
cttacacaggttaataagaacaaaaaatggagggagctggccacaaatttgaacgtgggg
acctccagcagtgccgccagctctctgaaaaagcagtacatccaatgtctgtatgctttt
gaatgtaaaattgagcgtggagaggacccaccacctgaaattatatctggagatagcaaa
aagaaccaggccaaaattcagcctccctccccagctggatctgggtctctccaggggccc
cagacaccacagtccaccagcagctccatggcggaaagcggagacttgaagccccctact
cctgcctccaccccacacagccagatgcccccaattccaagtggcaggagcagtgtgaac
ttgcaagatccatttgctgatagcgacttctcacggagaagtactatgaccccaaactct
ggctaccagtcaggcatgagcaccccggaaatgcctgttcgcatgggaccctatgaaccc
aataaagaccactttagtggtatgcgtaaagttggagaacagttcatgtctagtggacag
ggtcccaacagcagtctcggtgatcagtgcaacaggggaccacaaggcccaatgggaaac
atacctatgggccagcggcaccagtatccatatggccccggctatgacagaagaccagag
tcagggatgggcacagatggcagcatggggcctggagtgccacagccaaatataatgcct
tccaatgctgaacctgggatgtactctccaaatcgttaccctccacagcagcagcgacat
gattcctatagtaatcagtatcctgggcagggtgcgcctcctggtggttcctatccaaat
cagcagcctggaatgtacccgcaacaacaattgaactacaaaaggcctggtgatggcagc
tacccaccagctaaacggcatcatgacggtgagatgttcagtgggccttacaatgctcag
cagccacagccaccaccacaggctccccctagtggtccctcaagtggtcagcaggaaatg
tttaaccagtataacagttcttaccctggttcggagcgccgtccacccggtcctcagaat
cagttccctttcccttttggaagagatcggatgcaagcagggacaggcccaaactcccag
ggttccatgccacctcaaatgatgggcagtccaatgcagtctggtcctgacggtcctcaa
gctggcatgtggccgggccgaggtgatatgggctaccccagttaccctaaccgtcaagga
ccacctgctggtcctggccagggacctggctaccatacaatgaaccgatctgaagacatg
atgtcgtctgaaccacgcatgaatcatgatgggcagtggcctgggccacgacagccccca
tatggtcctggtagcgcaggtccaccaatgagcagacccttgcagtccaactaccagtct
cctcaaaccatgcaaaatcacattccgcaggtgtcaagccccacgcccatgcctcgcccc
atggaaagtaggacttcccccagcaaatcaccctacatgcccagcaatatcaaaatgcag
aaggtgggacctccagtccctgcatctcacattgtacctccctcagtacagcctccaatg
atgagaagagacctatccttccctccaggatcaattgaggctacgccgccagttctcaaa
tcgcgcaggcgtcttaccatgaaaaaaattggcactccagaagcatggagagtcatgatg
tcccttaaatcaggactgttggcagagagcacatgggctttagacaccatcaacatcttg
ttatatgacgacaacagtatttcgaatttcaaccttatacagctccctggtttcctggaa
ttaatcgttgagtatttccgccgttgtctcattgagatctttgggattctgagggaatat
gaagttggtaatccaggacaaagagctctgttggatcccagcgtgctcaaaaaagatgaa
gacactgtggatgatgaggtattggtggagggcatggaggaagatggagaaacagaggag
gaagatgaaggagaggaaatgcacaggttaaaacatcaagaacaacattcagcaccgctc
cagataaaacaagaagaaaagccaaggatgcttgatgactctgtgaagaaagaagattgc
catgggattgaaggggagttatctgcagaacccaagacttcggagccaccttgtctcgag
ttggctgtggctcaagagaagcctaaacaggctagcaagtttgataagcttcccttgaag
attgtgcgaaagaaggatccatttgtggtggactgctctaataagcttggccgattgcag
gaatttgacagtggccttctgcactggagtatcggtggtggtgatacaacagaacacatc
cagacccactttgaaaacaagatggacctgttgcgccaacggaagcatctacctgcccag
ttcccagacaggaagagaggagctcagaaggacagccaggcaccttcattgccctcatcc
agtgaagagcaccgaaaagaagtggaccggcagtctctccagagtcatccggcagcctct
ccagagtcatcaactgagaaagtgaccaacggaatttcagatttgagggaggacagacct
gctgactgcttagaaactgtctctgaggggacatcacacctagagaaggatcaagaaaaa
aaattgtcagaggcgacaactccagaaaacattaggccaacacctccaagcccatcatta
cagggtcagcgctgcattgccattttagaagatgagccacacagcaaggatgaagctcct
cttgtcacgctctcagactggcaagattcccttgcccgtcgctgcctttgtgtctccaac
atcgtccgcagtctctcgttcatcccgggcaatgactctgagatgtccaagcacccaggg
ctgttgctattgctgggccgcctgttgcttctccaccatctgcatccagagcgaaagcag
gcacctttaacctacgaaaaagaagaagagctggatgagagtcttggcagcaagaaagac
gaatggtggtgggactgtctggagctactgcgagaaaattgcttagtcactcttgccaac
atctcaggccagcttgacttctcagtctacactgagagcatctgcctgcctctgctggat
ggcttgctacattgggccgtttgtccttcagccgaagcccaagaccccttccctagtctc
gggcttaatggcgccttgtccccccagagactagtcctggagaccctctgtaagctcagc
attcaggacaacaatgtggacctaattctggcgacgccaccttttagtagattagagaag
ctctttgggaaccttgtgcgtctagttggagagcgaaaggtgcctgtttgtcgggagatg
gcggttgtgctgctggccaatcttgcacagggtgacagcctggcggcccgtgccattgcg
gtacagaaggccagtgtagggaatctgttgggtttcttggaggacagcttagcggctaca
cagttccagcagagccaaggttccttactgcacatgcaggggtcacactttgagccaaca
agtgtggacatgatgcggcgggctgctcgggctctgcttgccctcgctaaggtggaggag
aaccactctgagtttacgctctatgaatcgcggctactggacctttctgtctccccactc
atgaactcattggtgtcccatgtcatctgtgatgtactctttttgataggccagtcatga
DBGET
integrated database retrieval system
