Squalius cephalus (European chub): 307172814
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Entry
307172814 CDS
T11930
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform 1
KO
K08133
collagen type XIV alpha
Organism
scep Squalius cephalus (European chub)
Brite
KEGG Orthology (KO) [BR:
scep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
scep00535
]
307172814 (col14a1a)
Proteoglycans [BR:
scep00535
]
Extracellular matrix (ECM) proteoglycans
Others
307172814 (col14a1a)
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Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Fn3_PBP1
Fn3_VIN3
Pur_ac_phosph_N
Fn3_Dep-1_2nd
Ig_ANOS1
VWA_3
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
307172814
NCBI-ProteinID:
XP_079751593
LinkDB
All DBs
Position
15:21083596..21222935
Genome browser
AA seq
1796 aa
AA seq
DB search
MQVLGSRIKLWCPLISLALIQFFTPVSAQVSAPRRLRFKVLSEGKLLVSWKEPKGEYDGY
KFIYNSEPGGETSELQIARGENKAIIKDFNPRKEYAVKVIAVSGNLHSRALQGKYTEDQS
SDGDTTQPQRLKEAGPVEEGNEISGVDQFVCTTPAVADIVILVDGSWSIGRINFRLVRMF
LENLVNAFDVGIDKTRIGLAQYSGDPRIEWHLNGFSTKEAVIDAVKNLPYKGGNTLTGLA
LTYILENSFKPESGARTDVPKIGILITDGKSQDDVIPPAQTLRSAGVELFAIGVKNADEN
ELKAIASEPEDTHVYNVADFSIMSTIVDGLTRKVCDGVEQQDKEMNRDSVTEETASPPQD
MVISEVTAHSFRVSWTHAPGSVERYRVVYHPTRADILEEIVVGGRENSVVLQNLNSLTEY
EIAVFAVYRSAASDALRGNQITLALPTVSDLELYEVTDNSMRARWRDAQGASGYMILYAP
LSSETTDERELKVDETVTDVELKGLIPDTEYTVTVYAMFGEEASDPATVQETTMSLRPPR
NLRVTEVDHSSVRLNWDAVSSKVKGYRVMYIKTDGVQTNEVELGPVTNVYLKNLSPITEY
TVAVFALYDGGQSEALSGGFTTKLVPAPFSLMTSEVTSESFRVSWSHPARDVVLYKLAWS
PTGGGDKREMMLNGPLDSYVIQDLSPFTEYKVSLSAIYKDETESSAVIVLENTLDWTTEV
PTTIPSTTAIVHLGVTSLWLDEETHFSMQVNWEVLDSDVEQYRVTYVSADRTEETVLVSG
NRRSVILQPLLSDTRYKITVTPIYADEESTALSKSSSGKTLPLSGPSNLRVSDEWYNRFR
ISWDGPQFPTMGYRVIYQPISVSGRALETFVGDDVNTMLILNLLSDTEYSVQVIASYTTG
SSQPLTTKGKTLFLGVNNLSTKQVLSTSMCAQWQPHHHASVYRVVIESLLNGQKQEVRVG
GSASRECFFNLSPNTKYKISVYTLSQDTEGPAVTTIATTAPAPTQPPTAPPTTIPPPTIP
QAKEVCKAAKADLAFLVDGSWSIGDDNFQKIIRFLYSTTGALDVIGPEGTQVAIAQFSDD
ARTEFKLNSYSDKETLLDAVQRITYKGGNTKTGRAIKHVKEAIFTENAGVRRGIPKVLVV
LTDGRSQDDVNKISKEMQMEGYIIFAIGFADADYGELVNIASKPSERHVFFVDDLDAFKK
IEEQLITFVCEAATATCPSVLMSGNTLAGFRMMEMFGLVEKHYSSVQGVSMEPGTFNSFP
CYRLHKDALVSQPTRYLHPEGLPSDYTISMLFRILPETPQEPFALWEILDKNNEPLVGII
LDNGGKTLTFFNYDYKGEFQTVTFEGTEIKKIFYGSFHKLHVAISKTAAKVVIDCKTVGE
KSINAAGNITIDGVEVLGRMVRSRGRRENSAPFQLQMFDIVCSTSWASRDKCCELPGLRV
EEDCPAMPHACTCAQDSKGPPGPSGPPGGPGIRGSRGDRGEPGLTKTAGHSHFVSAARLV
GPQGPPGEIGPSGPQGPPGPQGPNGLSIQGAPGAPGEKGEKGEIGLPGPQGVPGASGGPG
RDGPPGPRGLLGKDGPQGRQGPPGPMGSPGAPGVPGSSGPPGQIGDQGQPGTPGTKGERG
ERGDIQSQAAVRAIARQVCEQLIQSHLSRYNSILNQIPSQSVSVRTVQGPPGEAGRPGSP
GPQGEQGPSGRPGFPGASGQNGRPGERGLPGERGEKGNPGVGTQGPRGPQGPPGPPGEGR
TGSQGPPGRPGIQGTSGRPGTPGSPGSAGPPGYCDQNSCLGYNVGDGNRSNSPMFP
NT seq
5391 nt
NT seq
+upstream
nt +downstream
nt
atgcaggttttgggatcaaggattaagctgtggtgtccgcttatctcgctggcactgatt
cagtttttcacccctgtttcggctcaagtttcagccccacgaagacttcgatttaaagtt
ctgagtgaaggcaagctacttgtctcatggaaggaaccaaaaggagaatatgatggctac
aaatttatatataatagtgaaccaggtggggaaacaagcgagttgcaaattgcaagggga
gagaataaagcaataataaaggattttaatcccaggaaggagtatgcagtcaaggttata
gctgtgagtggaaacctgcacagccgagcacttcagggaaaatacactgaagaccagagc
agtgatggagacaccactcaacctcaaagactgaaagaagctggacctgtggaagagggc
aatgagatctcaggagtggatcagtttgtatgcacaactcctgccgtcgcagatattgtc
atcctggtcgatggatcttggagtatcggaagaatcaatttccgtctggttcgcatgttc
cttgaaaacctggtcaatgccttcgatgtgggaatagacaaaacccggattggactggcc
cagtacagcggagatccacgaattgagtggcacttgaatggcttcagcacaaaagaagca
gtaatagatgctgtcaaaaacctgccttacaagggaggcaacactctcacaggtcttgct
cttacctacatcctggagaacagcttcaaacctgagtctggggctcgtaccgatgttccc
aaaattggaatcctgataactgacggcaaatcccaggatgacgttatcccgcctgctcag
accctgagaagtgctggagtcgagttatttgccattggtgtgaagaatgctgatgagaac
gagctgaaggccatcgcctctgaaccagaggacacacacgtttataatgtggctgacttc
agtatcatgagcactatagtggatggtctgaccaggaaggtgtgtgatggagtggagcaa
caggacaaagaaatgaatcgagattctgtcactgaagagactgcgtccccaccccaggac
atggtcatttctgaggtgactgcacacagttttcgtgtgtcctggactcatgctcctgga
agtgtggaaagatatcgagtggtttaccatccaaccagagcagacattctggaagagatt
gtggtgggcggcagggagaattcggtcgtcctgcagaatttgaactctctgactgaatac
gagattgctgtgttcgctgtgtaccgcagcgcagcgagtgacgctctcagaggcaaccag
atcacgctggctctacctacagtgagtgatctcgagctgtacgaagtgacagacaacagc
atgagagcccgctggagggatgcacaaggggcttctgggtacatgatcctttacgctcca
ctgagcagtgagactacagatgaaagagagctaaaggtggatgagacggtgactgatgtg
gaactgaagggattgattcctgacacagagtacaccgttacggtctatgccatgttcgga
gaggaggccagtgatcccgccactgttcaggagaccaccatgtccctgagacctccacgt
aacctgcgggtcactgaagttgaccacagctctgtccgactcaactgggacgcagtgtcc
agtaaagtaaagggctaccgtgtcatgtatatcaagacagatggtgtgcagaccaatgag
gtggagttgggtcccgtcaccaatgtgtacctgaagaacttgtcacccataacagagtac
accgttgctgtttttgctctctatgacggtggccaatccgaggcactcagtggaggattc
actacaaagcttgtgccagccccttttagcctgatgacatcagaggtcacctccgagagt
ttccgggtgagctggtcgcatcctgccagggatgtggtgctctataagttggcctggtca
cccactggaggaggagataagagagagatgatgctgaatggacctttggactcgtatgtg
attcaagacctgagtccttttacagagtataaggtttcactgtctgccatctacaaagac
gaaacagagagcagcgctgtgattgtgcttgagaatacattggactggaccacagaagtt
ccaaccaccattccctccactacagcaattgttcatctgggagtgactagcctatggctg
gacgaggagacccattttagtatgcaagtgaactgggaggtgctggactcagacgtggag
cagtaccgagtgacatatgtcagtgcagaccgcacagaagagacagtgttagtctcggga
aacagaagaagcgtgatcctgcaacctctcctctcagacacaaggtacaagatcacagtg
acccctatttatgcagacgaggagtccactgcactatcaaagtcctcttccggcaaaaca
ttgccactttctggtcccagtaacctcagggtgtctgatgaatggtacaatcgcttccgc
atcagctgggatggtcctcagttccccactatgggttacagggtcatctaccagcctatc
tctgtgtcaggtcgggctctagagacttttgtaggggatgatgtaaacaccatgctgatc
ctcaatctgttgagtgacacggagtacagcgttcaggtcatcgcctcctacaccaccgga
tccagccaacccctcaccaccaagggcaaaacactgttcttgggggtgaacaatctcagc
acaaaacaggtgctcagtaccagcatgtgtgcccagtggcaacctcaccaccatgcctct
gtctacagagtcgtcattgagtcactgcttaacggtcagaaacaggaagtgagggttggt
ggcagtgcatccagagagtgcttctttaacctttcccccaacaccaagtacaagatcagc
gtctacaccctttcccaggacacagagggccctgccgtcaccaccattgcgaccactgct
ccagcacccacccagccaccaaccgcaccacccaccacgatccctcctcctaccatcccc
caagccaaagaagtttgcaaagcagccaaggcagacctagccttccttgtagatggctcc
tggagtattggagatgacaactttcagaagattatccgtttcctatacagcacaactggt
gcacttgatgtgattggtcccgagggaacacaggtggccattgctcagttcagtgatgac
gccagaactgagttcaagctcaactcctatagcgacaaggaaactctactggatgccgtg
cagcgcatcacatacaagggaggaaacaccaagacaggtcgagccattaagcatgtgaag
gaggccatctttactgagaacgcgggcgtacggaggggcattcctaaagtgctggtggtg
ctcacggacgggcgctctcaggatgacgtcaataagatctctaaggagatgcagatggag
ggttacatcatctttgccattgggttcgctgatgctgactacggggagctggtgaacatc
gccagcaagcctagcgaaagacatgtgttctttgtggacgatctggatgcattcaagaag
attgaagaacagctcataacttttgtttgcgaggctgcaactgccacttgtccctcggtg
ttaatgagtgggaacactttagctggcttccgtatgatggagatgtttggtttggttgag
aagcactacagcagtgtgcaaggtgtctcaatggagcctgggactttcaacagcttcccc
tgctaccggttacacaaggacgccctcgtctcccagcctaccagatatctacatcctgaa
ggccttccctctgactacactatatctatgctctttcgcatactgcccgaaacccctcag
gagccttttgcattgtgggaaatcctcgacaaaaacaatgagccactagtgggcattatt
ctggacaacggagggaaaacgttaacctttttcaattacgactacaagggtgaatttcaa
acggtgactttcgaaggaactgaaattaagaagattttctatggcagtttccataagctt
catgtggccatcagcaaaaccgccgctaaagtggtgatcgactgcaaaacggttggagag
aaatccatcaatgccgcaggtaacatcaccattgatggagtggaggttctgggacgcatg
gtccgctcacgtggaaggagagagaactctgcgccgtttcagctccagatgtttgacata
gtctgcagtacatcatgggccagtcgggataagtgctgtgagctcccaggcttgagagta
gaagaggactgtcctgccatgccccatgcctgcacctgtgctcaggacagcaaaggacca
cctggaccctctggaccaccgggcggtcctggtatcagaggttcaagaggagatcggggg
gagccaggcttgacgaagactgcagggcattcacactttgtttcagcagcccggctggtg
gggcctcaagggccacctggtgagatcggaccttcaggaccgcaggggccaccgggtcct
caggggccaaatggactatccattcagggggcaccgggggctccaggagagaaaggagaa
aagggtgaaataggtctgccaggtcctcagggtgtaccaggtgccagtggaggaccaggc
cgagatggacctccaggaccaagaggtcttctgggtaaagatggaccccagggacgacag
ggccctccaggcccaatgggtagccctggtgctcctggggttccaggatcaagtggacca
ccaggacaaattggtgatcaggggcaacctggaactcccggcaccaaaggcgagcgagga
gagagaggtgacatacagtctcaggccgcagtccgcgccatagcgcgacaagtttgtgaa
cagctaattcagagtcacttgtctcgctacaactctatcctgaaccagattcccagtcag
tctgtttcagtacggacagtacaaggtccaccgggtgaggctggtcggccggggtctccg
gggccacagggagagcagggtccttctggcagaccaggattccctggagccagtgggcaa
aatggccgcccaggagagagaggtctcccaggagaaaggggagagaagggcaatccaggg
gtagggacacaaggccctcgtggtcctcaaggacccccaggccctcctggagaaggtcgg
acaggaagtcagggcccaccagggagaccagggattcaaggcacctcaggacgtccaggt
acccctggtagccctggttctgctggaccccccggctactgcgatcagaactcctgcctc
gggtacaacgttggagatggcaaccgatctaattcccccatgttcccatag
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