KEGG   Squalius cephalus (European chub): 307172829
Entry
307172829         CDS       T11930                                 
Symbol
LOC307172829
Name
(RefSeq) nucleoporin SEH1-like
  KO
K14299  nucleoporin SEH1
Organism
scep  Squalius cephalus (European chub)
Pathway
scep03013  Nucleocytoplasmic transport
scep04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:scep00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    307172829 (LOC307172829)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    307172829 (LOC307172829)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scep03019]
    307172829 (LOC307172829)
   04131 Membrane trafficking [BR:scep04131]
    307172829 (LOC307172829)
Messenger RNA biogenesis [BR:scep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     307172829 (LOC307172829)
Membrane trafficking [BR:scep04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    307172829 (LOC307172829)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_RIG_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd WDR55 Beta-prop_EIPR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C Beta-prop_IFT140_1st Caudo_TAP_N
Other DBs
NCBI-GeneID: 307172829
NCBI-ProteinID: XP_079751624
LinkDB
Position
15:24426185..24434490
AA seq 353 aa
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSIKVWDKGDSGEWNCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAIVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISSKLSCSCISWNPSSSRAHAP
MIAVGSDDSNATYGGKVQIYEYNEVTRKYAKAETLMTVTDAVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLVPLRKDSSSSAPTKFEVQVLAQFDSHNSQVWRVSWNITSTILASSGDDGC
VRLWKANYMDNWKCTGILKGDGSPVYGSSGQPGALSAVLGSSAQSALNGATGR
NT seq 1062 nt   +upstreamnt  +downstreamnt
atgtttgtcgcgcgcagcatcgcagccgatcacaaagatctgatccacgatgtttcatat
gattttcacggccggagaatggcgacgtgttccagcgaccaaagcattaaggtgtgggat
aagggggatagtggagaatggaactgcacagccagctggaaaactcacagtggctcagtt
tggcgagtgacctgggcccatccagagtttggacaggtgttggcatcctgctcctttgac
cgtactgccatagtgtgggaggagattgttggagagtccaatgacaaacaacgagggcaa
agccactggatcaagagaaccacacttgtggacagtcggacatctgtgaccgacgtgaag
tttgccccgaagcacatgggcttgatgctgaccacatgttctgctgacggggtggtgcga
atctacgaggcccctgacgtgatgaacctgagccagtggtccctgcagcacgagatctcg
tccaaactctcctgctcctgcatctcgtggaacccttccagttctcgagctcacgcccct
atgattgcagtggggagtgatgacagcaatgcgacatatggtggcaaggttcagatatac
gagtataatgaagttacaaggaaatatgccaaagcggagacactgatgacagttacagat
gcggttcatgatattgcatttgctccaaatctgggccggtctttccatgtccttgctatt
gccaccaaagacgttcgcatcttcaaactggttccacttcgaaaggacagctcttcatca
gcgcctactaaattcgaggtgcaggtgctggcccagtttgacagtcataactctcaggtg
tggcgcgtcagttggaacatcaccagtacgattctggcctcttccggtgatgatggctgt
gtgagactctggaaagcaaactacatggacaattggaaatgcacaggtattctgaaggga
gatggcagtccagtatatgggtcatctggtcagcctggtgctctgagtgccgtcctgggc
tcttctgcacagagtgctttaaacggggccactggacgatag

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