Squalius cephalus (European chub): 307173193 Help Entry 307173193         CDS       T11930                                  Symbol nphp4 Name (RefSeq) nephrocystin-4 isoform 1   KO K16478   nephrocystin-4 Organism scep  Squalius cephalus (European chub) Brite KEGG Orthology (KO) [BR:scep00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:scep03037]     307173193 (nphp4) Cilium and associated proteins [BR:scep03037]  Primary cilia and associated proteins   Nephronophthisis-related proteins    307173193 (nphp4) SSDB OrthologParalogGFIT Motif Pfam:  NPHP4_C2_3rd Ig_NPHP4_1st NPHP4_C2_2nd Ig_NPHP4_4th Ig_NPHP4_2nd Ig_NPH4_3rd NPHP4_SK ASH RAG1_pre-RNase_H Motif Other DBs NCBI-GeneID:  307173193 NCBI-ProteinID:  XP_079752245 LinkDB All DBs Position 16:complement(12147136..12307944) Genome browser AA seq 1425 aa AA seqDB search MSDWKNTFERNRVIPPHSQTARQAPGSSQGLQLLFKQIDGLHIRQSELPQSLQYQLRVTL FDSGHQHFFGRTWKSSSHSLSGTSGQTSRVLFNEVVYFHTSLCLNTVVAVVELVCTRADG SQDAVGSGFGLLQLFTGRADSSISQGEGRLSLFNGTPRALLHPTLKDPLQLNAVLSVMEG SQLLYSIQPHPALTPIMHLLPPNILVSGHDRIPGVVFSTDTGTADAMRKPCLLKSFSCVL EGLRVALFPSVEVFESDLLQLLNRDCQNTNRGAEGRSVVVQERRLLVGVHNGWGWVEKPH VLVLEREATGSGAARARGASAGGGFRQTSTDKLSDGLSVRGSVELKMMRDVVFSIVFQLQ YVFSCPLVGDGQMTSTAVHRAAFMQCVRWCAWSLFSDPEASGENVCLNLQGGALPNPWGV MVYSASTQQTNSGKCVIKFKFSSGVEGAPCSTTLKVSHRETSPPKKLLSASQDERILEPT ASTLQSSRGPALSLSQLVATSRYPTMSHTVGSPWQQQLPSQLSPSPMASAHQLSHVERPV ASSIAHLELSVQEREGDRSEEEDEMQELTFTPVHAPVITLGTHSAGSSRSTSRRSLAQLF SSGFPQILDHQNQVAEVLDPSEPVNFDLQREEADHLQANTLILQFLAFTRVPQNGVNSDW PSSVHFTFQLYRFQPVTTERLKLLEPERNSKLKSNPHYPCVLSLINKDGSPSSGFPGLQL QYRVDPQFLKPGERGWFLRYLALHSLQIDVWDSESLMLIGSAAVELKHLLRQGRAAVQVS HELEVITTEYLQDAKFASRHDSKHSASPAINVYTTVKGILHLRLGNVGGSVSSSHSSLAL PPSLSHVVQPSDASQGFAGGSVPALAVLRLNASNARRARRLPEIDSELARLLQSTMREVG GAALHQQDEVKEVRQRKIDRMAAVRQHEQLKATPPFQDNANMTRHRTDRVQHSRDLRVIE AYRERCKAQEIINMLSQAITTKHTLYATLGTAEFFEFVLKNPFNVSQTVTIECDDPELSV IVKSEEWRYFKELTKTLTPLEEEMFHLKESTLTPQVYLRPKESVHIPFKYQTFVCGRTFP LQDTESLKISRSPQMAQKHLSNTIQAKSIKVLFRGEDRKPLAICQVDVEPTPHVVDQTFR FYHPELTFLKKAIRLPAAWDDTADGSATLHVRCSDPNVICHTTNLTPEEPQDVYLKVPGS PSPQIRKFFITIFTDPWLASPAQIWQVYVHYLQRMDLSCVCGTLSWHSLVLRGTQVIRRV KCYTSPPLELQVDPVEVFALPAQGIQDIHVGLRALRPGSRFFYLNVVDVDTRQLVASWLL CITCRQPVISKAFEINVPVDRGKGSNKKISFTNPYSSSRVFNLRTDRPDLLQFKEEQFQI GGGEPYTIGLRFAPSQNPGMEEILIFINDKQDKNEDTYCFRVQYR NT seq 4278 nt NT seq  +upstreamnt  +downstreamnt atgtctgactggaaaaacactttcgagagaaaccgagtgatcccacctcacagtcaaacc gccagacaagctccaggatcttctcaaggtctacagctgctcttcaaacagatcgatgga cttcacataagacagtcagagttgccacaatcactccagtatcagctgcgcgtgaccctg tttgactcgggtcaccagcacttcttcggccgcacatggaagagcagctcacactctctc agtggcacgtcaggtcagaccagtcgagtgcttttcaatgaggtggtttacttccacact tccctgtgtttgaacactgtggtggcagtggtggagttggtgtgtaccagggcagacggt tcccaggatgcagtggggtcagggtttggactcctccagctcttcacaggtcgtgcagac tccagcatctctcagggagagggcaggttgagtcttttcaatggaacccccagagccctc ctgcacccaacgctgaaagaccctctgcagttgaatgctgtattatcagtgatggagggc tctcagctgctctactccatacagccacacccagctctcactcccatcatgcacctgctc ccgccaaacattctagtatctggacatgaccgcatccctggcgttgtgttctccacggac acaggcacagcagatgcaatgcggaagccttgtctgttgaagagcttctcgtgtgtgttg gagggcctacgtgtggcactcttcccctccgtggaggtcttcgaatctgacctgctccag ctgctcaacagagactgccagaatacaaacaggggcgcggagggacgctcggttgtggtg caggagcgcaggctgctggttggggtacataacggctggggttgggtggagaaacctcat gtgttggtgctagaacgtgaggccacagggagcggtgcagccagggctcgtggagccagc gcaggcggaggcttcaggcagacctccacggacaaactcagtgacggactgtctgttcgt ggcagtgtggagctgaagatgatgagggacgtggttttcagcatcgtcttccagctccag tatgttttctcttgtccactggttggagatggccagatgacatccacagctgtgcacaga gcagcgtttatgcagtgtgtgcgttggtgtgcttggagtctgttttcggatcctgaggcc tccggagagaacgtgtgcctcaacttgcagggcggtgctctccccaacccttggggtgtc atggtctactctgcaagcacacagcagacaaattcaggaaaatgtgtcatcaagttcaag ttttcatctggtgtggaaggagctccttgcagcacgacattaaaagtgagccaccgggaa acgtcgccacctaagaagttactttcagcatcccaagatgaacgcatcttggagccgacg gcttcgacgctgcagtcttcacgcggcccagcgctgtctctctctcagctggttgcgact tcacgctacccgaccatgagccacacggtggggtctccatggcaacaacagctcccctct cagctctctccctccccgatggcatcggcccaccagctgtcacatgtcgagcgtccagtt gccagcagcatagctcacctggagctgagtgtgcaggagagagagggagacagaagtgag gaagaggatgagatgcaggagctgacctttaccccagtgcatgcccctgtcatcaccctt ggaacacactctgctggctcctccagatcgacctcccggagatctttggcccagctcttc tcctctggttttcctcagatcttggaccatcagaaccaggtggctgaggttttggatcct tctgagcctgtcaactttgacctccagagagaagaagcggatcatctgcaggccaacact ctcatcctgcagttcctggcctttaccagggtccctcaaaatggtgtgaattcagactgg cccagctctgtccatttcactttccagctttaccgcttccagcctgtcaccacagaacgt ctgaagctgcttgagccggagaggaacagcaagctcaaatccaatcctcattacccctgt gtcctctcccttatcaacaaggacggctcacctagctctggttttcctggtctgcagctg caataccgagttgacccgcagttcctcaagccaggtgagcgggggtggttcctgcgatac ctggcgctccactccctgcagattgatgtctgggacagtgaatccttaatgctgattggc tcagctgctgtggagctgaagcatttgctgcgtcaaggccgtgcggccgtccaggtgagc catgagctggaagtgatcactactgagtacctgcaggatgccaaatttgccagcaggcat gacagcaagcacagcgcctctccagccatcaatgtctacactactgtaaaaggaattctg catttgcggcttggaaacgttggtggcagtgtgtcaagttcccacagttctttggctctt cctccatcgctctcccatgtggtccagcccagtgatgcctctcagggttttgcgggagga agtgtccctgctttagcggttctccggcttaacgcgagcaatgccagacgagcccgtcga ttgccagaaattgacagcgagctggccagactgctacaaagcaccatgagggaagtgggt ggagccgcactgcatcagcaggacgaagtgaaggaagtgcgccagaggaagattgacaga atggcagctgtccgtcaacatgagcagctgaaggccacacccccttttcaggataacgca aacatgacgaggcatcggaccgatcgggtgcagcattcccgtgatctgcgtgtgatcgag gcctatcgtgaacgctgtaaagcacaggagatcatcaacatgctctctcaagccatcact accaaacacactctgtacgccacactcggaacagctgagttcttcgaatttgtgctcaag aatccattcaacgtttctcagacagtcaccattgaatgcgatgacccagagctcagtgta atcgtgaagagcgaggagtggagatattttaaggagttgacgaagactctgactcctcta gaggaggagatgtttcacctaaaggagagcacactgacaccacaggtttacctgcggccc aaagaaagcgtccacatccccttcaagtaccagaccttcgtctgtggtcgcacattccct cttcaggatactgaaagcttaaagatttcaagaagtccacagatggctcagaaacatctg tccaatacaattcaagccaaatccatcaaggtgttgttccgtggggaagacagaaagcct ctggcgatctgccaggtggatgttgaaccgacgccacatgtggtggaccagaccttccgt ttctaccatcctgaactcaccttcctaaagaaggccattcgcctgcctgcagcctgggac gacacagcagatggttccgccacccttcatgtgcgttgcagcgaccccaatgtcatctgc cacaccaccaacctgactccagaagaaccacaggatgtttacctgaaagtacctggtagc ccaagcccacagataaggaaattcttcattaccattttcactgacccttggctggcctcc cctgcgcagatctggcaggtatacgtgcattacctgcaaaggatggacctgagctgtgtg tgcggcactctgagctggcattcgctggttctgcgcggcacgcaagttattcgcagggtc aagtgctacacgtcgcctcccctcgagcttcaggtggatccagttgaggtttttgctctt cctgctcagggaattcaagatatccatgtagggctgagggctctgcgccctggaagccgt ttcttttacctcaatgtagtcgatgtggacacacggcagctagtcgcctcctggttgctg tgcataacatgccgacagcctgtaatatccaaggcatttgaaatcaacgttcctgtagac agagggaagggcagcaataagaaaatcagtttcacaaacccctactcttcctctagggta ttcaatctccgcacagaccgcccagacctgcttcagtttaaagaggagcaatttcagatt gggggaggggaaccctacaccatcggcctgcgctttgctccaagtcagaaccccggcatg gaagagattctcatcttcatcaatgacaaacaggataagaacgaggacacttactgtttt agggttcagtacagataa

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