Streptococcus parasanguinis FW213: Spaf_1365
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Entry
Spaf_1365 CDS
T02115
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
scf
Streptococcus parasanguinis FW213
Pathway
scf03410
Base excision repair
scf03430
Mismatch repair
scf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Spaf_1365 (recJ)
03430 Mismatch repair
Spaf_1365 (recJ)
03440 Homologous recombination
Spaf_1365 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scf03400
]
Spaf_1365 (recJ)
DNA repair and recombination proteins [BR:
scf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Spaf_1365 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Spaf_1365 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spaf_1365 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
AlaDh_PNT_C
L27
Motif
Other DBs
NCBI-ProteinID:
AFJ26343
UniProt:
I1ZMR9
LinkDB
All DBs
Position
complement(1375191..1377416)
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AA seq
741 aa
AA seq
DB search
MITSKYDWQLASPSADEAFLALAKKAGLEASVATLLYERGIQTKEDLEDFLEPKLEKLHD
PYLLHDMDKAVERIRRAIEDYEQILIYGDYDADGMTSASIMKESLEQMGAEVQVYLPNRF
TDGYGPNESVYKYFIEQQGISLIVTVDNGVAGNQAIAMAQAMGVDVIVTDHHSMPEVLPD
AYAIIHPEHPDADYPFHYLAGCGVAFKLACALLEEVPVDLLDLVAIGTIADMVSLTDENR
ILVKYGLGVLQHTQRMGLQELLEIAGIRPEDVNEETVGFQIAPRLNALGRLDDPNPAIEL
LTGFDDEEAHEIALMIHQKNEERKEIVQNIYDEAKIMVDPSLSAQVLAKEGWNPGVLGIV
AGRLLEELHQPVVVLSIEDGRAKGSARSPESVNIFDALDPHRSLFVAFGGHAGAAGMTLE
VDQLPALSQALTDYIVEQEVDLSSKSSLAIDEELHLTELTLETLKSFDRLSPFGMDNKKP
VFLVRNFKVEGARSMGAGNTHLKLKISQEDATFEVVAFGLGSLEAEFAQAQDLELAVQLS
VNQWNGQTTLQLMLVDARVDGVQLFNVRSKNASLPASVPVLDFTKELPDLTGASAVVVGN
IPEDLKQLRQIFQEHDFQAVYFKNEIAKAYYLTGYGSRDQYAKLYKTIYQYPEFDVRYKL
KDLAAYLKIQQILLVKMIQIFQELGFVTIENGIMKVNKEAEKREIAESSIYQNLKQTVKE
QELMALGTVREIYDYLTGQAS
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgatcacttcaaaatacgattggcagttagcttcaccaagtgcagatgaggccttttta
gcccttgccaaaaaagcaggcctggaagcgtccgtagcaaccttgctgtatgagcgtggc
attcagaccaaagaggatttagaagactttttagaacccaagctggagaagctacacgac
ccttatttgctccatgatatggacaaggcagtggagcgcatccgacgggccatcgaagat
tatgagcagatcctcatctacggagactatgatgcggacgggatgacctcagcctccatt
atgaaggaaagcttggagcagatgggagcagaggtgcaagtctacctacccaaccgcttc
acagacggctatggtcccaatgagagtgtctacaaatactttatcgagcagcaaggcatt
tccctgattgttacggtggacaatggtgtggcgggcaatcaagccattgccatggcccaa
gcaatgggagtcgatgtcatcgtgaccgaccaccactctatgccagaggttttaccggat
gcttatgcgatcattcatcccgagcatcctgatgcggattatcccttccattatctagca
ggatgtggtgtggcctttaagttggcctgtgccctcttagaggaagtaccagtcgatctc
ttagacctggtagcaattgggaccattgctgacatggttagtctgacggatgagaatcgg
atcctggtcaaatacggtctgggtgttctccaacatacccagcgcatgggcttgcaggag
ctcttggagattgcagggattcgtccggaggatgtcaatgaagaaacggttggttttcag
attgctcctcgtctcaatgcccttggtcgcctcgatgaccctaatccagctatcgaacta
ctgactggttttgacgatgaagaggcgcatgagattgcccttatgattcatcaaaagaat
gaagaacgaaaagagattgtccaaaacatctatgatgaagctaaaatcatggtcgatccg
agcttgtccgcccaggtcttggccaaggaaggctggaatccaggagttcttggcattgtc
gccggtcgtttattagaagagcttcatcagccagttgttgttttaagcatcgaagatggg
cgggctaaaggaagcgctcggagtcctgagtcggtcaatatctttgatgccctcgatccc
caccggtcgctctttgtcgcctttggcgggcatgccggtgcagcagggatgacgctcgag
gtggaccaactccctgccttgtctcaggctcttacggattacattgtagaacaagaggtg
gatctcagcagcaagtctagcttagccatcgacgaggaactgcatctaacagaactaacg
cttgagaccttgaaaagctttgatcgcttgagtccttttggcatggacaataaaaaacca
gtctttctggtccgtaacttcaaggtagaaggggcacgctcgatgggagccggcaatacc
cacttgaaactcaaaatttctcaagaagatgcgacctttgaggtggttgcctttggcttg
ggaagcttagaggcagagtttgcacaagcgcaagacctagagctagctgtgcagttgtcg
gtcaaccaatggaatggccaaacaaccctgcagctcatgctggttgatgcgcgtgtggat
ggcgtgcagctctttaatgtccgctccaaaaatgctagcctccccgcaagtgttcccgtt
cttgattttactaaagaactgccagatctgacaggggcatccgctgttgtagttggaaat
atccctgaggatttaaagcaactacggcaaatcttccaagagcatgatttccaggctgtt
tatttcaaaaatgagatcgccaaagcctactatctgacaggatacggtagcagggaccag
tatgccaaactctataaaaccatctaccagtacccagagttcgatgtccgctacaaactc
aaagacctagcggcctatctcaagatccagcagatcctcttggtcaaaatgattcagatt
ttccaagagctgggctttgtgaccattgaaaatggcatcatgaaggtcaataaagaagca
gaaaaacgggaaatcgcagaaagcagcatctaccaaaacctcaaacaaaccgttaaagaa
caggagttgatggcccttggaactgttcgtgaaatctacgactacctgacaggtcaggcc
tcatga
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