Streptococcus parasanguinis FW213: Spaf_1499
Help
Entry
Spaf_1499 CDS
T02115
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
scf
Streptococcus parasanguinis FW213
Pathway
scf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spaf_1499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scf03019
]
Spaf_1499
03016 Transfer RNA biogenesis [BR:
scf03016
]
Spaf_1499
Enzymes [BR:
scf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Spaf_1499
Messenger RNA biogenesis [BR:
scf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Spaf_1499
Transfer RNA biogenesis [BR:
scf03016
]
Prokaryotic type
tRNA degradation factors
Spaf_1499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1_RRP5
CSD
RNase_II_C_S1
AAA_SelU
Motif
Other DBs
NCBI-ProteinID:
AFJ26470
UniProt:
I1ZN46
LinkDB
All DBs
Position
complement(1519266..1521626)
Genome browser
AA seq
786 aa
AA seq
DB search
MKTSIKEYLQEHDKAQINDLAAALGKEGSKDFRDLVKTISLMERRHELKFEDDGSLRLAQ
KKAPAITLKGIFHAHKNGFGFVSLEGEEEDLFVGRNDVAHAIDGDTVEIVITKVADRNKG
TAAEAKIIDVLEHSVKTVVGQIVLDEEKPKYAGYIRSKNQKISQLIYVKKPAIQLEGTEI
LKVEIDQYTSRKHNYFVATVRDVVGHVTDPGIDVLEVLESMDIVSEFPEEVLKEAEQVPD
APSKKDLEGRLDLREEITFTIDGADAKDLDDAVHIKLLKNGNFELGVHIADVSYYVTEGS
ALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDPHGKVVKHTI
TQTVINTTFRMTYSDVNDILAGDEEKAQTFKKIVPSIHQMATLHGILEGMRIRRGALNFD
TNEAKILVNKEGKPVDIVLRQRGIAERMIESFMLIANETVAEHFTRLKLPFIYRIHEDPK
AEKVQKFIDYASSFGIQIYGTASEMSQEALQEIMRKVEGEPYADVLSMMLLRSMQQARYS
EHNHGHYGLAAEFYTHFTSPIRRYPDLMVHRMVREYGKSQEVAEHFEQVLPDIASQSSSR
ERRAIDAEREVEAMKKAEYMEDYVGEEYDAVVSSVVKFGLFVELPNTVEGLIHITNLPEF
YHFNERDLTLRGEKSGVTFRVGQQIRIKVERADKMTGEIDFSYIPSEWDVVEKGLKAKGR
DRDGNRRDRRRKDKKVSKGSTARKDDKRKDSSSKSKKKKGKKPFYKEVAKKGAKHGKGRR
KGSRAK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagtattaaagaatatttacaagagcatgacaaagcccagatcaatgatttg
gcagcagctctaggaaaagaagggtctaaggatttccgtgacttggtcaaaaccatctct
ctgatggaacgccgtcatgagttgaaattcgaagacgatggctctcttcgtttggctcaa
aagaaggccccagccattaccctcaaggggatctttcatgcccataaaaatggctttggt
tttgtcagtttagagggcgaagaagaggatctctttgttggccgaaatgatgtcgcccac
gctattgatggggacaccgttgagatcgtcattaccaaggtggcagaccgaaacaaagga
acagcagcagaagctaagattattgatgtcttggaacatagtgtcaaaacagtagttgga
caaattgttctggatgaggaaaagcctaaatatgccggctacattcgttcgaaaaatcaa
aagatcagccagctgatctatgtgaagaagccagccatccaattggaagggactgaaatc
ctcaaggtcgaaattgatcaatacacgagtcgcaaacacaattattttgtggcgactgtg
cgggatgtggtcggtcatgtgacagatccaggaatcgatgtcttggaagtgttagaatcc
atggacattgtctcagaatttccagaagaagtgctgaaagaggctgagcaggttccagat
gcaccatctaaaaaggatttagagggacggttagatctgcgagaggagatcacctttacc
atcgatggggcagatgccaaagacttggacgatgcagtccatatcaagctactcaagaac
ggcaactttgagctgggtgttcacatcgcagatgtttcttattatgttacagaaggttca
gcactcgacaaggaagctctaaatcgtgcgacctctgtctatgtgaccgaccgggtagta
cccatgcttccagaacgcttgtccaatgggatctgttctttgaatcctaatgtggaccgc
ctgacccagtctgccatcatggagattgatcctcatggaaaggtcgtcaagcataccatt
acccaaacagtgatcaatacaaccttccgaatgacctatagcgacgtcaatgatatctta
gcaggcgacgaagaaaaggctcaaacctttaagaaaattgtcccaagtattcatcaaatg
gctaccttgcacggtattctagaaggtatgcggattcgccgaggagccctcaattttgat
accaatgaggctaaaatcctggtcaataaagaaggaaaaccggtcgatatcgttttgcgt
caaagagggattgccgagcggatgattgagtcctttatgttgattgccaatgaaacggta
gcggaacactttacgcgactgaagctgccgttcatctaccggatccacgaagatccgaaa
gcagaaaaagtacagaagtttatcgattatgcttctagctttgggatccagatctacgga
acggctagtgagatgagccaagaagccctgcaagaaattatgcgcaaggtcgaaggagaa
ccctatgcggatgtcctttcgatgatgttgttgcgctcgatgcaacaggcccgctattca
gagcacaaccatggccactatgggcttgctgctgagttttatacccactttactagtccc
atccgtcggtatccggacctgatggttcatcgaatggtgcgcgaatacggaaaatcccaa
gaagtggcagagcactttgaacaagtccttccagacattgccagccaatcctctagtcgg
gaacgccgagccattgacgcagagcgcgaagtagaagccatgaagaaggcagaatacatg
gaagactatgttggtgaagaatacgatgccgtggtttccagtgtggtaaaatttggcctc
tttgtggagttgccaaatacggttgaaggcttgatccatattaccaatcttcctgaattc
taccattttaacgaaagagatctaacccttcgcggagaaaaatcaggagtgaccttccgt
gtcggtcagcagatccgaatcaaggtagaaagagccgacaagatgacaggagagattgat
ttctcttatattccaagtgaatgggatgtcgtcgaaaaaggccttaaggctaaagggcgt
gaccgagatggtaatcgcagggatcgcagacgcaaggacaaaaaagtttctaagggatca
accgctagaaaagatgacaagcggaaagattcttcctctaaatccaaaaagaaaaaaggg
aagaaaccattttacaaggaagtagcaaagaaaggagccaaacatggcaaagggcgaagg
aaaggtagtcgcgcaaaataa
DBGET
integrated database retrieval system
