Streptococcus constellatus subsp. pharyngis C1050: SCI_1107
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Entry
SCI_1107 CDS
T02832
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scg
Streptococcus constellatus subsp. pharyngis C1050
Pathway
scg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCI_1107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scg03019
]
SCI_1107
Messenger RNA biogenesis [BR:
scg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCI_1107
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
SUFBD_core
P8
Motif
Other DBs
NCBI-ProteinID:
AGU80042
LinkDB
All DBs
Position
complement(1132346..1134007)
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AA seq
553 aa
AA seq
DB search
MSNIKLIALGGVRENGKNLYIAEVDESIFILDVGLKYPENEQLGVDFVIPNMDYLFENKD
RISGVFLTHGHADAIGALPYLLAETKVPVFGSELTIELAKLFVKGNDTVKKFNDFHVIDE
DTEIDFGGTIVSFFKTTHSIPESLGIVLKTSEGNIVYTGDFKFDQTASQSYATDFARLAE
IGREGVLALLSDSANADSSIQVASESEVGKEITDTIGDWNGRVIVAAVASNLSRIQQVFE
AAAKTGRRVVLTGFDIENIVRTAIRLKKLSLVDERLLIKPKEMSKFEDHELIILETGRMG
EPINGLRKMSIGRHRYVEIKEGDLIYIVTTPSIAKEALVARVENMIYQAGGVVKLITQDL
RVSGHGNERDLQLMLNLLQPKFLFPIQGEYRELAAHAKAAMAVGMLPENIFIPKRGSIME
YEKGDFLLAGAVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVAITVNRRDKKIISK
AKVHTRGFVYVKKSRDILRESADLINNTVEDYLAKDNFDWGELKGAVRDSLAKYLFEQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatattaaattgattgctttgggcggtgtacgtgaaaatggaaaaaatctttac
atcgctgaagtggatgaatctatttttatccttgatgtcggactaaagtatccggaaaat
gaacagcttggtgtggactttgtcattccaaatatggactatttatttgaaaataaggac
cgcatttcaggggtctttttgacacacggacatgcagatgcgattggtgccctgccttat
ttgttggcggaaacaaaggtacctgtgtttggatcggaattaacgattgaactggctaag
ctatttgtcaaaggaaatgatacggttaaaaaattcaatgattttcatgtgattgatgaa
gatacagagattgactttggaggtaccattgtatctttctttaaaacaacgcactccatt
ccagagagtctagggattgtcttaaaaacgtctgaaggaaatattgtttatacgggtgat
tttaagtttgaccaaacggctagtcagtcttatgcaacagattttgcgcgtttagcagaa
attggtcgagaaggcgttctagctcttcttagtgattctgcaaatgcagatagtagtatt
caagtggcaagtgaaagtgaagtcggcaaagaaatcaccgatacgattggtgattggaat
ggacgcgtcatagttgcagcagttgcaagtaatctctcgcgtattcaacaggtttttgaa
gccgctgctaagacaggtcgtcgtgttgtgctgactgggtttgacattgaaaatatcgtt
cggacggctattcgcttgaagaaattatcgcttgtagatgagcgtttgctgattaaacct
aaagaaatgtctaaatttgaagatcatgaattgatcattttggaaactggtcgaatgggt
gagcctatcaatggcttgcgcaaaatgtctattggtcgtcaccgctatgtagaaatcaaa
gaaggtgatttgatttacattgttacaacaccgtctatcgcaaaagaggccttggtagcg
cgcgtagaaaatatgatttatcaagctggtggtgttgttaaattgattacgcaagatttg
cgggtgtctggtcatggaaatgagcgcgatttgcaactgatgttaaatctcttgcaacca
aaattcttgttcccaattcaaggagaatatcgtgaattagcagcgcatgctaaagctgca
atggctgttggaatgttgccagaaaacatttttattccaaaacgcggtagcattatggaa
tatgaaaaaggagatttcttgcttgctggtgcagtccctgctggcgatgtcatgattgac
ggaaatgcgattggtgatgtagggaatatcgttcttcgtgaccgcaaagttctgtctgaa
gatggtatctttatcgtagctattacagtgaaccgtcgtgacaagaagattatttcaaaa
gcaaaagttcacacgcgtggatttgtttatgtcaagaaaagtcgtgatattttacgtgag
agtgctgatttaatcaataatacagttgaagattaccttgcgaaagataattttgactgg
ggtgaattgaagggagctgtacgtgacagtcttgcgaaatacctctttgagcaaaccaaa
cgtcgtccagccattttacccgttgtaatggaagtacgttaa
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