Sphingobium chlorophenolicum: Sphch_0228
Help
Entry
Sphch_0228 CDS
T01522
Name
(GenBank) Long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sch
Sphingobium chlorophenolicum
Pathway
sch00061
Fatty acid biosynthesis
sch00071
Fatty acid degradation
sch01100
Metabolic pathways
sch01212
Fatty acid metabolism
sch02024
Quorum sensing
sch04146
Peroxisome
Module
sch_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Sphch_0228
00071 Fatty acid degradation
Sphch_0228
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Sphch_0228
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sphch_0228
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sch01004
]
Sphch_0228
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sch04147
]
Sphch_0228
Enzymes [BR:
sch01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Sphch_0228
Lipid biosynthesis proteins [BR:
sch01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Sphch_0228
Exosome [BR:
sch04147
]
Exosomal proteins
Exosomal proteins of breast milk
Sphch_0228
Exosomal proteins of breast cancer cells
Sphch_0228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
AEG47928
UniProt:
F6EV04
LinkDB
All DBs
Position
1:236131..237837
Genome browser
AA seq
568 aa
AA seq
DB search
MESSENIWKTRYNHPSPWEQSFPSLSMVEMVENSAAANPQAVMIDFMGRKTTYGEMLRTI
WRIARGLQDMGVRKGDRVGLYLPNVPHYVAAYYGAMMAGATVVNYSPLYTAAELEHQVED
SGTKILFTLSASALLPTALQVLDNSSLERLVVGCVAEALPPAKSVLFRLFKRKETATVPH
DPRITHYADLLRHGEDFAPVAIDPEQDIALLQYTGGTTGRPKGAMLTHQNLTANARQVRL
IDPHPEAPDRILAVLPFFHVFANTCVLNRTVLNGGEMVMLPRFDGTQVLAAIQRTKATSL
PGVPTMYQALLDHPATPNIDFSSLRLCISGGAPLPLEVKQRFEAMTGAKLVEGYGLTESS
PVVCSNPYEGLNKPGTVGQPVPGTRVKLVDREDPTRPPPEGEPGELVFGGPQIMKGYWQR
PDADLEVFVDGWLRTGDVGVIDADGYVKIVDRLKDMIAVGGFKVFPSEVEKVLYHHPAVK
EALVIGIPDHYRGECPKAFVTLQEGSDIDGAALKDWLNPQLGKHEKVCEVEVRLNLPKTL
VGKLSRKELVAEERAKAEAAAPQTGTAG
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggagagcagcgaaaacatctggaaaacccgctataatcatccctccccgtgggagcag
tccttccccagcctgtcgatggtggagatggtggagaacagcgccgcggccaatccgcag
gcggtgatgatcgatttcatgggccgcaagacgacctatggcgaaatgttgcgcaccatc
tggcggatcgccaggggtttgcaggatatgggcgtccggaagggcgatcgggtcggcctc
taccttcccaacgtgccccattatgtcgcggcctattatggcgcgatgatggccggggcc
accgtcgtcaactactctcctctctacaccgccgccgaactggaacatcaggtcgaggat
agcggcacgaagatcctcttcaccctgtcggccagtgcgctgttgcccacggcgctgcag
gtgctggacaatagcagcctggaacggctggtcgtcggctgcgtcgcggaggcgctgccg
cccgccaaatcggtgctgttccgcctgttcaagcggaaggagaccgcgacggtcccgcac
gatccgcgcatcacccactatgccgatctgctgcgccatggcgaggatttcgcgccggtc
gccatcgatccggagcaggacatcgccctgctgcaatataccggcggcaccaccggccgg
cccaagggcgcgatgctgacccatcagaatctgaccgccaatgcgcggcaggtgcgcctg
atcgatccccatcccgaagcgccggatcgcatattggcggtgctgcccttcttccatgtc
ttcgccaatacctgcgtcctgaaccgcacggtgctgaacggcggggagatggtgatgctg
ccgcgtttcgacggcacgcaggttctcgccgcgatccagcggacgaaggcgacgtcgctg
cccggcgtgccgaccatgtatcaggcgctgctggatcatccggcgacgccgaatatcgac
ttctcctccctgcgcctgtgcatttccggcggcgcgcccctgccgctggaggtgaagcag
cggttcgaggcgatgaccggggccaagctggtggagggatatggccttaccgaaagcagc
ccggtggtctgttccaacccctatgagggtctcaacaagcccggcactgtcgggcagccg
gttcccggcacgcgggtcaagctggtcgaccgcgaagacccgacccgtccgccgcccgaa
ggcgaaccgggcgagctggtctttggcgggccgcagatcatgaaaggttattggcagcgc
ccggacgccgacctggaggtgttcgtggacggctggctgcggaccggcgatgtcggggtg
atcgacgcggacggctatgtgaagatcgtcgaccggttgaaggacatgatcgccgtcggc
ggtttcaaggtctttcccagcgaggtggagaaagttctctaccatcatccggcggtcaag
gaagcgctggtgatcggcattcccgaccattatcgcggtgagtgcccgaaggctttcgtg
accttgcaggagggttccgacatcgatggcgcggcgctcaaggactggctgaatccgcaa
ttgggcaagcatgagaaagtgtgcgaggtggaggtgcgcctgaacctgcccaagacgctg
gtcggcaagctgtcgcgcaaggaactggtcgccgaggagcgcgccaaggccgaggcggcg
gcgccgcagactggaaccgcgggctga
DBGET
integrated database retrieval system
