Sphingobium chlorophenolicum: Sphch_1797
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Entry
Sphch_1797 CDS
T01522
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sch
Sphingobium chlorophenolicum
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sch03016
]
Sphch_1797
Enzymes [BR:
sch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Sphch_1797
Transfer RNA biogenesis [BR:
sch03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Sphch_1797
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEG49482
UniProt:
F6ET19
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All DBs
Position
1:1918993..1920159
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AA seq
388 aa
AA seq
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MQIHPLITDSKTLASFCARIAKSPYIAIDTEFMRENSYWPDLCLVQVADEHEAAAIDPKA
PGLDLSPLLDLMVDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQIAAMALGLGEQIG
YGNLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGD
WLDQEMERISDPSNYENKPDEAWQRVRIASRKADVLGRLKALAAWREMEAQDKNLPRGRI
VKDETLADIASHPPRTQEDLGKVRGLSATWKTNDIGNRLMLALASHTPLAKEEMPERDPK
RPGLGKDGALVADLLKLLLKIRSRDINVAARLIARSDDIDALAAGVREDLSILEGWRYEQ
FGRDAVDLVEGRLAFAVRNGRLKMTRTQ
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatccatccgctgattaccgacagcaagactctcgcttcattctgcgcccggatc
gccaaatcgccctatatcgcgatcgataccgaattcatgcgcgaaaacagctattggccc
gacctctgcctggttcaggtcgcggacgagcatgaggcggccgccatcgatcccaaggcc
cccggcctcgacctttcgcccctgctcgacctgatggtcgacaatgaggatgtgctgaag
gtcttccatgcgggcgggcaggatctggagatcatctacaacctgaccggcaagacgccc
catccgttgttcgacacgcagatcgcagcgatggcgctggggctgggcgagcagatcggc
tacggcaatctggtcgacgcctggctgggcgtgcaactcgacaagggcgcccgcttcacc
gactgggcgcgccgccctctcgacaaacggcagatcgattacgccatcggcgacgtcacc
tatctgatccagatattccccaagatgctggaggaactgcgccgcaccggacgcggcgac
tggctggaccaggagatggagcggatcagcgacccttccaattacgagaacaagccggac
gaggcctggcagcgcgtccgcatcgccagccgcaaggccgatgtcctcggccgcctgaag
gcgctggccgcctggcgcgagatggaggcgcaggacaagaatttgccccgcggccgcatc
gtcaaggacgagacgctggccgacatcgccagccacccgccccgcacgcaggaagacctg
ggcaaggtgcgcggcctttccgccacctggaagaccaacgacatcggcaaccgcctgatg
ctggcgctggcaagtcacacgccactcgccaaggaggagatgcctgagcgcgatcccaag
cgccccggcctgggtaaggacggtgcgctggtggcggacctgttgaagctgctgctgaaa
atccgctcgcgggacatcaatgtcgcggcccgcctgatcgcccgcagcgacgatatcgac
gcgctggcggcaggcgtgcgggaggatctgtcgatcctggaaggctggcgctatgaacag
ttcggccgcgatgcggtcgatctggtggagggtcgcctggccttcgcggtcaggaacggc
cgcctcaaaatgacccgcacgcaatag
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