Sphingobium chlorophenolicum: Sphch_1872
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Entry
Sphch_1872 CDS
T01522
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sch
Sphingobium chlorophenolicum
Pathway
sch03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sphch_1872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sch03021
]
Sphch_1872
03400 DNA repair and recombination proteins [BR:
sch03400
]
Sphch_1872
Enzymes [BR:
sch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sphch_1872
Transcription machinery [BR:
sch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sphch_1872
DNA repair and recombination proteins [BR:
sch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sphch_1872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
TmoB
IDH
Motif
Other DBs
NCBI-ProteinID:
AEG49556
UniProt:
F6EUA3
LinkDB
All DBs
Position
1:1988703..1989767
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AA seq
354 aa
AA seq
DB search
MTVNMKNWQELKKPNSLEIKVSGDGRRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNIKQVALRMEGDGPRRLQLSATGPAEVRAGDI
TTVGDIEVMNPDLVICHLDQGATLNMELTADVGKGYVPAVANRPADAPIGLIPIDALYSP
VRQVAYKVDNTRVGQELDYDKLSLTVETDGTVTPEDAVAYAARILQDQLQLFVHFEDALP
AAAPAAGAAAGGSASEGESDANQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKT
EAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatgaagaactggcaggaattgaagaagcccaacagccttgagatcaag
gtttcgggcgacggcaggcgcaaggcgaccttcgtcgccgaacctctggagcgcggcttc
gggctgacgcttggcaatgcgctgcgccgggttcttctgtcctcgctccagggcgcggcg
gtcacctcgatcaagatcgagaacgtcctgcacgaattttcctcgctcgccggcgtccgc
gaagatgtgacggacatcgtccttaacatcaagcaggtcgcgttgcgcatggaaggcgac
ggtccgcgccgtctccagctttccgccaccggccccgccgaagtgcgggcgggcgacatc
accaccgtcggcgacatcgaagtgatgaacccggacctggtgatctgccacctggaccag
ggcgcgacgctgaacatggaactgaccgccgacgtcggcaagggctatgtccccgccgtc
gccaaccgtccggcggacgccccgatcggcctgatcccgatcgacgcgctctactcgccg
gtccgtcaggtcgcctacaaggtcgacaatacccgcgtcggccaggaactggactatgac
aagctgtcgctgactgtcgagaccgacggcaccgtcacgccggaagacgcggtggcctat
gccgcccgcatcctgcaggaccagctccagctcttcgtccacttcgaggacgcgctgccc
gccgccgctccggccgcaggcgccgccgctggcggttcggccagcgagggcgagagcgac
gcgaaccagatcaaccgctatctgctcaagaaggtggacgaattggaactgtcggtccgc
agcgccaactgcctcaagaacgacaacatcatctatatcggcgatctggtccagaagacc
gaggccgagatgctgcgcacccccaatttcggccgcaagtcgctcaatgaaatcaaggaa
gtgctgtcgtccatgggcctgcgcttaggcatggacatccccggctggccgccggaaaat
atcgaggaaatggccaagaagctcgaacaggagcttctgggctga
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