Sphingobium chlorophenolicum: Sphch_1917
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Entry
Sphch_1917 CDS
T01522
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
sch
Sphingobium chlorophenolicum
Pathway
sch02020
Two-component system
sch02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sphch_1917
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sphch_1917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sch03021
]
Sphch_1917
Transcription machinery [BR:
sch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sphch_1917
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AEG49594
UniProt:
F6EUE1
LinkDB
All DBs
Position
1:2036314..2037828
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AA seq
504 aa
AA seq
DB search
MALAPRLDLRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGEMEKNPLLESGGPDDFAPP
ADGVDRAAEQHDLRAETGDADQLIGQGLGGADSPLDVDYGAETFIDDGPGDRMAGAAIGS
GGMDMLSGGSGEAPDFDSFANPEQGLQEYLMDQARSALSGMDLTIAAQLIGQIDEAGYLA
ANLLETAHGMGVPLYQVEQVLSVIHGFDPTGVGARSLSECLTLQAKEADRYDPCMAKLLA
NLDLLAKGALPQLRRICGVDEEDMADMIRELRGYDPKPGLRFSTESAAPVTPDLFVRPTQ
EGWAIEVNSATLPRVLINRTYYVELASGPQDRTSKAWLADCLASANWLVKALDQRQKTIV
KVASEIVRQQEDFFRKGVEHLKPLTLKAVADAIQMHESTVSRVTSNKYLSCPRGLYELKY
FFTSGVAAAGGEGAVSAEAVKSHIKALIAAETADAILSDDTLVDLLRAKGMDIARRTVAK
YREAMGIGSSVQRRRQKALRGQAA
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgcgccccgtctcgacctgcggcagagccagtcgctggtgatgacgccgcag
ttgcagcaggcgatcaagctgctggcgctgtccaatctggagatagaggccttcgtcgcg
ggcgagatggagaagaatccgctgctggagtcgggtgggccggacgatttcgcgccgccc
gccgacggggtggatcgggcggcggagcagcatgacctgcgcgccgagacgggcgatgcc
gaccagttgatcggtcaggggttgggcggcgcggattcgccgctggacgtggattatggc
gcggagaccttcatcgacgacgggccgggcgaccggatggcgggcgccgccatcggctcc
ggcgggatggacatgctgtcgggcggcagcggcgaggcgccggatttcgacagtttcgcc
aatccggagcaggggcttcaggaatatctgatggatcaggcgcgcagcgcgctgtcgggc
atggacctgaccatcgccgcgcaactgatcgggcagattgacgaagccggctatctggcg
gccaatctgctggagaccgcccatggcatgggcgtgccgctttatcaggtcgaacaggtg
ctcagcgtaatccacggcttcgatccgaccggggtcggggcgcggtcgctgtcggaatgt
ctgaccttgcaggcgaaggaggcggatcgttacgacccctgcatggcgaagctgctggcc
aatctggacctgctcgccaagggggcgctgccgcagttgcgccggatctgtggcgtggat
gaggaagatatggcggacatgatccgcgaattgcgcggctatgatcccaagcctggcctg
cgcttttccaccgagagcgccgcgccggtaacgccagacctgttcgtgcgcccgacgcag
gagggctgggcgatcgaggtcaacagcgccaccctgccccgcgtgctgatcaaccggacc
tattatgtcgaactcgcctccgggccgcaggacaggacgtccaaggcctggctggcggat
tgcctggccagcgccaactggctggtgaaggcgctggaccagcggcagaagaccatcgtc
aaggtcgcaagcgagatcgtccgccagcaggaggatttcttccgcaagggggtggagcat
ctgaagccgctgacgctgaaggccgttgcggacgcgatccagatgcatgaatcgaccgtc
agccgggtgacgtcgaacaaatatctgtcctgcccgcgtgggctgtatgaactcaaatat
ttcttcaccagcggcgtggcggcggcgggtggcgagggcgcggtgtcggccgaggcggtg
aagagccacatcaaggcgctgatcgcggcggagacggccgatgccatcctgtccgacgac
acgctggtcgacctgctgcgcgccaagggcatggacatcgcccgccgcaccgtggccaaa
tatcgcgaggcgatggggatcggctcctccgtgcagcggcggcggcagaaggcgttgcgg
gggcaagcggcttaa
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