Sphingobium chlorophenolicum: Sphch_1950
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Entry
Sphch_1950 CDS
T01522
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sch
Sphingobium chlorophenolicum
Pathway
sch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sphch_1950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sch03019
]
Sphch_1950
03400 DNA repair and recombination proteins [BR:
sch03400
]
Sphch_1950
Enzymes [BR:
sch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sphch_1950
Messenger RNA biogenesis [BR:
sch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sphch_1950
DNA repair and recombination proteins [BR:
sch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sphch_1950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEG49627
UniProt:
F6EUU4
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All DBs
Position
1:complement(2072108..2073880)
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AA seq
590 aa
AA seq
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MRPDIPTLLHNIFGFPAFRGVQEQVVGRIMAGQPTLAIMPTGAGKSLCYQLPAVALDGCC
VVVSPLIALMHDQLRAAQAVGIRAASLTSVDADWRETQDRLRNGDLDLLYVAPERASGEG
FRNLLRATKIALFAIDEAHCVSEWGHDFRPDYRLLRPLLDEFPDVPRLALTATADHHTRD
DILVQLGIPRDGLIIAGFDRPNIRYAVHPRDGLPRQLSDLIAGQTGPGIVYAPTRAATEK
LAEILGKTGRPTRAYHAGLDPRIRAANQAAFIASEDMVMVATIAFGMGIDKPDVRFVAHA
ALPKSIEGYYQESGRAGRDGEPAEAHLFWGADDFARARQRIGELDPLRQQGERARITALG
GLVETGTCRRAILLRHFGENPPPGCGNCDNCLNPPPSVDVTQTARKFLSAVYRTGQSFGV
GHIEQVLTGAISDKIRERGHDKISVYGIVDGEETALLRPVSRALLVRDALQTNEHGGLEF
GPNARPILRGEEEVSLVLPPRKERRRKSARNGGAENPVGDPLFDALRACRRELAQEAGVP
PYVIFHDSTLREMAEQRPTSLAELGHISGVGQRKLDAYGDAFLAAIRPYL
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccgacatcccgactctcctccacaatattttcggctttcccgcctttcgcggc
gtgcaggaacaggtggtcggccgcatcatggcgggccagccgacgctggcgatcatgccg
accggcgcgggcaagtcgctctgctatcagcttcccgccgtcgcgctcgacggctgctgc
gtcgtcgtttcccccctgatcgcgctgatgcacgaccagcttcgcgccgcgcaggcggtc
ggcatccgtgccgccagcctgaccagcgtcgacgccgactggcgcgagacgcaggatcgg
ctgcgcaatggcgatctcgacctgctctacgtcgccccggaacgcgccagtggagagggg
ttccgcaacctcctgcgcgccacgaaaatcgccctcttcgccatagacgaggcgcattgc
gtctccgaatggggccatgatttccgccccgactatcgcctgctgcgcccgctgctggac
gaatttcccgacgttccccgtctcgcgctgaccgccaccgccgatcatcacacccgcgac
gacatcctcgtccagctcggcattccccgcgacggcctgatcatcgcgggcttcgaccgc
ccgaacatccgctatgccgtgcaccctcgcgacggcctgccgcgtcagctttccgacctg
atcgcgggccagaccggccccggcatcgtctacgcccccacccgcgccgcgaccgagaag
ctggccgaaatcctcggcaagaccggccgcccgacccgcgcctatcatgccgggctggac
ccgcgcatccgcgccgccaaccaggccgccttcatcgccagcgaggatatggtgatggtc
gccaccatcgccttcggcatgggcatcgacaagccggacgtccgcttcgtcgcccatgcg
gcgctgcccaaatcgatcgagggctattatcaggaatccggccgcgcaggccgcgacggc
gaaccggccgaagcgcatcttttctggggcgcggacgatttcgcccgcgcccgccagcgc
atcggcgaactcgaccccctgcgccagcagggcgaacgcgcccgcatcactgcattgggc
ggactggtcgaaaccggcacctgccgccgcgccatattgctgcgccatttcggggaaaat
cccccgcccggctgcggcaattgcgacaattgcctgaacccgccgcccagcgtcgacgtg
acccagaccgcccgcaaattcctgtccgccgtctatcgcaccggccagagcttcggcgtc
ggccatatcgagcaggtgctgaccggcgccatcagcgacaagatccgcgagcgcggccat
gacaagatttccgtctacggcattgtcgacggggaggagacggcgctgctgcgccccgta
tcccgtgccttgctggtgcgcgacgcgctccagaccaacgaacatggcgggctggaattc
ggccccaatgcccgtccgatcctgcgcggggaggaagaggtcagcctggtcctgccgccc
cgcaaggaacgccgccgcaagagcgcccgcaacggcggcgccgaaaatcccgtgggcgat
ccgctgttcgacgcgctgcgcgcctgccgccgcgaactggcgcaggaggcgggcgtgccc
ccctatgtcatcttccacgattcgaccctgcgcgaaatggcggagcagcgcccgacgagc
cttgccgaactcggccacatcagcggcgtgggccagcgcaagctggacgcctatggcgat
gccttcctggcggcgatccggccttatctttaa
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