Sphingobium chlorophenolicum: Sphch_2014
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Entry
Sphch_2014 CDS
T01522
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sch
Sphingobium chlorophenolicum
Pathway
sch04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Sphch_2014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sch03019
]
Sphch_2014
03009 Ribosome biogenesis [BR:
sch03009
]
Sphch_2014
04131 Membrane trafficking [BR:
sch04131
]
Sphch_2014
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sch04147
]
Sphch_2014
Messenger RNA biogenesis [BR:
sch03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Sphch_2014
Ribosome biogenesis [BR:
sch03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Sphch_2014
Membrane trafficking [BR:
sch04131
]
SNARE
SNARE associated proteins
Others
Sphch_2014
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Sphch_2014
Exosome [BR:
sch04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Sphch_2014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_22
AAA_5
AAA_33
AAA_2
AAA_14
TIP49
NACHT
IstB_IS21
nSTAND3
NPHP3_N
AAA_28
RNA_helicase
Zeta_toxin
AAA_18
DUF815
Mg_chelatase
AAA_7
AAA_19
Sigma54_activat
AAA_30
AAA_3
ABC_tran
TsaE
AAA_24
ATPase
AAA_17
Vps4_C
SLFN-g3_helicase
NB-ARC
AAA_lid_PRS2_C
Parvo_NS1
AAA_25
Viral_helicase1
PhoH
Motif
Other DBs
NCBI-ProteinID:
AEG49691
UniProt:
F6EVD0
LinkDB
All DBs
Position
1:complement(2144742..2147033)
Genome browser
AA seq
763 aa
AA seq
DB search
MAEEETAGRRIQVANARPEDAGRGLARLPLAVMAELHLIEGDVIEIVGKRSTPARVVRPY
KEDEGLDVLRLDGLQRANAGVGSGDFVAIRKVDPRPAQRVVFAPAQNNLRLQGNPEALKR
VFFQRPLASGDIVATSGQQQVPPGDMPPQLRQMLAAPAYALQEIRLVVVSTVPKGVVHID
ADTEVELRAEYEEPRESRRADVTYDDVGGMADAIDQLREMVELPLRYPELFERLGVDPPK
GVLLHGSPGTGKTRLARAVANESEAEFFLINGPEIMGSAYGESEKQLREIFEAAAKAAPS
ILFIDEIDSIAPKRGNVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRR
PGRFDREIIVGVPDERGRREILGIHTRGMPTGDKVDLSELARMTYGFVGADLAALTREAA
IEAVRRFMPRLNLEEGTIPPDVLEELSVTREDFMAAIKRVQPSAMREVMVQAPNIGWADI
GGLDDAQMRLKEGVELPLKDPDAFRRIGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANF
IATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPQVTERV
VNTILAEMDGLEELQSVVVIGATNRPTLIDPALLRPGRFDELIYVPVPDQAGRRRILSIH
TGKMPLADDVDLDMLAERTERFTGADLEDLVRRAGLVALRQSLSVEKVTQAHFEAALEDT
RASVTPEMEREYEQIQATLKQSVMQVDPIGFVAPGMLRGRGKE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagaagagaccgcaggacgcaggatacaggtggccaacgcccggccggaggat
gcggggcgcggacttgcgcggctgccgctggcggtgatggcagaactccatctgatcgaa
ggcgatgtgatcgagatcgtcggaaagcgctccacccccgcccgcgtggtgcggccctac
aaggaggatgaggggttggacgtcctgcgcctcgacgggcttcagcgcgccaatgccggg
gtcggatccggcgacttcgtggcgatccggaaggtcgatccccgccccgcccagcgcgtc
gtcttcgcgcctgcacaaaataatctgcggctgcagggcaatcccgaagcgttgaagcgc
gtcttcttccagcggccgctggcatccggcgatatcgtcgccacgtccgggcagcagcag
gttccccccggcgacatgccgccgcaattgcgccagatgctggccgcgcccgcctatgcg
ttgcaggaaatccggctggtggtggtgtcgaccgtgccgaagggcgtcgtccatatcgac
gccgataccgaagtcgaactgcgcgccgaatatgaggagccgcgcgaatcgcgccgggcc
gacgtcacctatgacgatgtcggcggcatggccgacgccatcgaccagttgcgcgagatg
gtggaactgccgctgcgctatcctgaactgttcgaacggctgggcgtcgatccgcccaag
ggcgtgctgctccatggttcgcccggcaccggcaaaacccggctggcccgcgccgtcgcc
aatgaatcggaagcggaattcttcctgatcaacgggccggagatcatggggtcggcctat
ggcgagtcggaaaagcagcttcgcgagattttcgaggcggcggccaaggcggctccgtcg
atcctgttcatcgacgagatcgattccatcgcgcccaagcgcggcaatgtgaccggcgag
acggaaaagcggctggtcgcgcagttgctgacgctgatggacgggctggagccgcgcacc
aatctggtcgtcatcgccgccaccaaccggccggaggcgatagacgaggcgctgcgccgc
cccggccggttcgaccgggagatcatcgtcggcgtgcccgacgagcgcgggcggcgggag
atattgggcatccacactcgcggcatgcccaccggcgacaaggtggacctgagcgaactc
gcccgcatgacctatggtttcgtcggtgccgaccttgccgccctgacccgcgaggcggcg
atcgaggcggtgcgtcgcttcatgccgcgcctcaatctggaggaagggacgatcccgccc
gacgtgctggaggaactgtccgtcacgcgggaggatttcatggcagcgatcaagcgcgtc
cagccttccgccatgcgcgaggtgatggtgcaggcgccgaacatcggctgggccgatatc
ggcgggctggacgacgcgcagatgcggttgaaggaaggggtggaactgccgctcaaggat
cccgacgccttccgccgcatcggcatccgcccggccaagggcttcctgctctacggcccg
cccggcaccggcaagacgctgctggcgaaggcggtggcgcgggaggcgcaggctaatttc
atcgccaccaaatcctccgacctgctgagcaaatggtatggggagagcgagcagcagatc
gcccggctcttcgcccgcgccaggcaggtggcgccgacggtcatcttcatcgacgaactg
gacagtctcgtccccgctcgcggcggcggcctgggcgaaccgcaagtgacggagcgtgtg
gtgaacaccatcctggccgagatggacgggctggaggagttgcagtcggtggtcgtcatc
ggcgcgaccaaccggccgacgctgatcgatccggcgctgctgcgaccggggcggttcgat
gagctgatctatgtccccgtgccggaccaggccgggcgcaggcgcatattgtccatccat
accggcaagatgccgctggccgacgacgtcgatctggacatgctggctgagcgcaccgaa
cgcttcaccggcgccgatctggaggatctggtccgccgggcggggctggtcgcgctgcgc
cagtcgctgtcggttgaaaaggtcacgcaggcgcatttcgaagccgcgctggaggacacc
cgcgcctccgtcacgccggaaatggagcgcgaatatgagcagattcaggcgacgctgaag
cagagcgtgatgcaggtcgatcccatcggcttcgtcgcgcccggcatgctgcgggggcgc
ggcaaggaatga
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