Sphingobium chlorophenolicum: Sphch_2487
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Entry
Sphch_2487 CDS
T01522
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sch
Sphingobium chlorophenolicum
Pathway
sch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sphch_2487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sch03019
]
Sphch_2487
03110 Chaperones and folding catalysts [BR:
sch03110
]
Sphch_2487
03029 Mitochondrial biogenesis [BR:
sch03029
]
Sphch_2487
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sch04147
]
Sphch_2487
Enzymes [BR:
sch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Sphch_2487
Messenger RNA biogenesis [BR:
sch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Sphch_2487
Chaperones and folding catalysts [BR:
sch03110
]
Heat shock proteins
HSP60 / Chaperonin
Sphch_2487
Mitochondrial biogenesis [BR:
sch03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Sphch_2487
Exosome [BR:
sch04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Sphch_2487
Exosomal proteins of other body fluids (saliva and urine)
Sphch_2487
Exosomal proteins of breast cancer cells
Sphch_2487
Exosomal proteins of colorectal cancer cells
Sphch_2487
Exosomal proteins of bladder cancer cells
Sphch_2487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Mu_Gam-Sipho_Gp157-TOTE
Motif
Other DBs
NCBI-ProteinID:
AEG50141
UniProt:
F6EYU1
LinkDB
All DBs
Position
1:complement(2641394..2643031)
Genome browser
AA seq
545 aa
AA seq
DB search
MAAKDVKFSRDARERILRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEI
ELKDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRGI
DLAVAKVVEDVKARSKPVSGSQEVAQVGIISANGDVEVGQKIAEAMEKVGKEGVITVEEA
KGLDFELDVVEGMQFDRGYLSPYFITNPEKMAVELADPYILIHEKKLSNLQSILPILEAV
VQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAVLTKGEV
ISEDLGIKLENVTLGMLGTAKRVTIDKDNTTIVDGAGDSEAIKGRTEQIRAQIESTTSDY
DREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALL
YATKALEGLKGANDDQTRGIDIIRKAIEAPLRQIAQNAGVDGAVVAGNLLRENDETKGFN
AATDTYENLVAAGVIDPTKVVRAALQDAASVAGLLITTEATIAELPADDKAPMGMPGGGM
GGMDF
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaaggacgtaaagttttcgcgtgacgctcgtgagcgcatcctgcgcggcgtc
gacatcctggccgacgcggtcaaggtgaccctgggccccaagggccgcaacgtcgtcatc
gacaagagcttcggcgccccccgcatcaccaaggacggcgtcagcgtcgccaaggaaatc
gaactgaaggacaagttcgagaatatgggcgcccagatggtccgcgaagtcgcttcgaag
accaacgacatcgccggtgacggcaccaccaccgcgaccgtcctggcccaggcgatcgtt
cgcgaaggcatgaagtcggtcgccgccggcatgaacccgatggacctgaagcgcggcatc
gacctcgccgtcgccaaggtcgtcgaggacgtcaaggctcgctcgaagccggtttccggt
tcgcaggaagtcgcccaggtcggcatcatctcggccaatggcgacgtcgaagtcggccag
aagatcgccgaagcgatggaaaaggtcggcaaggaaggcgttatcaccgtggaagaggcc
aagggtctcgacttcgaactggacgtcgtggaaggcatgcagttcgaccgcggctacctg
tcgccctacttcatcaccaacccggaaaagatggctgtcgagctggctgatccgtacatc
ctgatccacgaaaagaagctgtcgaacctgcagtcgatcctgccgatcctcgaagccgtg
gttcagtcgggccgtccgctcctcatcatcgccgaggacattgaaggcgaagcgctggcg
accctggtcgtcaacaagctgcgcggtggcctgaaggtcgctgcggtcaaggcgcctggc
ttcggcgaccgccgcaaggccatgctggaagacatcgccgtactgaccaagggcgaagtc
atctccgaagacctcggcatcaagctggagaacgtcacgctcggcatgctcggcaccgcc
aagcgcgtcaccatcgacaaggacaacaccaccatcgtcgacggcgctggcgacagcgaa
gcgatcaagggccgcaccgagcagatccgcgctcagatcgagtcgaccacgtccgattac
gaccgcgaaaagctccaggagcgtctggcgaagctggctggcggcgtggccgtcatcaag
gtcggcggcgcgaccgaagtggaagtcaaggagcgcaaggaccgcgtcgacgacgcgctg
cacgccacccgtgcagccgtcgaagaaggcatcgtccccgggggcggcacggctctgctg
tacgcgaccaaggctctggaaggcctgaagggcgccaacgacgaccagacccgtggcatc
gacatcatccgcaaggccatcgaagcgccgctgcgccagatcgcccagaatgcgggcgtc
gacggagccgtcgtcgccggcaacctgctgcgcgaaaatgacgagaccaagggcttcaac
gccgcgaccgacacctatgaaaacctcgtcgccgctggcgtgatcgacccgaccaaggtc
gtccgcgccgcgctgcaggacgccgcttcggtggccggcctgctgatcacgaccgaggcg
accatcgccgaactgcccgccgacgacaaggcgccgatgggcatgcccggcggcggtatg
ggcggcatggacttctaa
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