Streptomyces chengbuensis: QRN89_19965
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Entry
QRN89_19965 CDS
T10474
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sche Streptomyces chengbuensis
Brite
KEGG Orthology (KO) [BR:
sche00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sche03016
]
QRN89_19965
Enzymes [BR:
sche01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QRN89_19965
Transfer RNA biogenesis [BR:
sche03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QRN89_19965
Prokaryotic type
tRNA splicing ligases
QRN89_19965
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WJY51867
LinkDB
All DBs
Position
4504665..4505858
Genome browser
AA seq
397 aa
AA seq
DB search
MSYVEVAGAKVPIRMWTDPATVEDGAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSRIERAIPVGRGMHDDPVDPG
RVYGFPSTGFDDFWSGFDGVADPVKFRRERAAKQMGTLGSGNHFIEFCLDETGSVWLMLH
SGSRNIGKELAEYHIGEAQRLPHNQGLVDRDLAVFVSDTPQMAAYRNDLFWAQEYAKYNR
AIMMGLFQEVVRREFRKAKVAFDPVISCHHNYVAEERYEGMDLLVTRKGAIRAASGDFGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRRMSRNAAKRRFSTRDLEEQTRGVECRKDSG
VVDEIPGAYKPIEKVIDQQRDLVEVVAKLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtagaggtggccggcgccaaggtcccgatccggatgtggacggatccggcg
acggtcgaggacggcgccatgcagcagctgcggaacgtcgcgacgctgccctggatcaag
gggctcgccgtgatgccggacgtgcactacggcaagggcgcgacggtcggttcggtcatc
gcgatgcacggcgcggtctgcccggcggcggtcggcgtcgacatcggctgcgggatgtcg
gccgtgaagacctccctcaccgcgaacgacctgcccggcgatctctcccggctccggtcc
aggatcgagcgggcgatcccggtcggccgcggcatgcacgacgacccggtggaccccggg
cgggtgtacgggttcccgtcgacgggcttcgacgacttctggtcggggttcgacggcgtc
gccgacccggtcaagttccgccgggagcgtgcggccaagcagatggggacgctcggatcc
gggaaccacttcatcgagttctgcctggacgagaccggttcggtctggctgatgctgcat
tccggctcgcggaacatcggcaaggagctcgccgagtaccacatcggcgaggcccagagg
ctgccgcacaaccagggactggtcgaccgtgatctcgcggtgttcgtctcggacaccccg
cagatggcggcctaccggaacgacctgttctgggcgcaggagtacgccaagtacaaccgc
gcgatcatgatggggctgttccaggaggtcgtccgcagggagttccggaaggcgaaggtg
gccttcgacccggtcatctcctgccaccacaactacgtggcggaggagcggtacgagggc
atggacctgctggtcacccggaagggagcgatccgggcggcgtccggcgacttcgggatc
atccccggctcgatgggcacgggctcgtacatcgtgaagggcctcgggaacgagaagtcg
ttcaactcggcctcgcacggcgccggccgccggatgagccgcaacgcggcgaagcggcgg
ttctcgaccagggacctggaggagcagacgcgcggcgtggagtgccggaaggactcgggg
gtcgtggacgagatccccggcgcgtacaagccgatcgagaaggtgatcgaccagcagcgg
gacctcgtggaggtcgtcgcgaagctgaagcaggtcatctgcgtgaagggctga
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