Streptomyces chromofuscus: IPT68_01360
Help
Entry
IPT68_01360 CDS
T07378
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
schf
Streptomyces chromofuscus
Brite
KEGG Orthology (KO) [BR:
schf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
schf03016
]
IPT68_01360
Enzymes [BR:
schf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IPT68_01360
Transfer RNA biogenesis [BR:
schf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IPT68_01360
Prokaryotic type
tRNA splicing ligases
IPT68_01360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QOV47410
UniProt:
A0A7M2TFA7
LinkDB
All DBs
Position
complement(333034..334449)
Genome browser
AA seq
471 aa
AA seq
DB search
MTLVQETPFRFRIERQGPMRVPGVVFAARELVPQVAGDKALEQVANVATLPGIVRASYAM
PDVHWGYGFPIGGVAATDVEAGGVISPGGVGFDISCGVRLLAAGMDRDPPASGMRRLMDI
LGDTVPRGLGPGGLWELSGRAQLEKILVAGAGYAVEHGHGVPRDLERCEDRGALAGADPS
QVGQRAADRGLKQVGSLGSANHFLEVQAVDRVYDAETATAFGLHQGQVCVMIHCGSRGLG
HQVCTDHVRVMDQSLRAYGIHLPDRQLACVPVVSPPGRAYLGAMAAAANYARANRQLLTQ
AARRAFAAAGVGLDLVYDVSHNIAKIESHDVDGVSRQLCVHRKGATRALPPGHPDLPADL
TRAGQPVMVPGTMGTASYVMVGTVGNDAFWSSAHGAGRVWSRHQALRRVRGEQLGGELEA
HGIAVRPVSWRALAEEAPDAYKDVDAVATATEGAGLARRVVRLVPLGVVKG
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atcacactggtgcaggagaccccgttccgcttccgtatcgagcggcagggcccgatgcgt
gtgcccggggtcgtcttcgcggcgcgggagcttgtgccgcaggtggccggggacaaggcg
ctggaacaggtcgcgaacgtggcgaccctgcccggcatcgtccgtgcctcgtacgcgatg
cccgacgtgcactgggggtatggcttccccatcggaggcgtggccgccacggacgtcgaa
gcaggcggagtgatatcgccgggcggcgtcggattcgacatctcctgcggcgtccggctg
ctcgccgccggtatggaccgcgacccgccggcctccggaatgcggaggctgatggacatc
cttggcgacaccgtcccgcgcggcctgggacccggcggactgtgggaactgtccgggcgg
gcgcagctggagaagatactggtcgccggtgccgggtacgcggtcgagcacggacacggc
gtgccacgcgacctggagcgctgcgaggaccgcggagcgctggcgggagccgacccgtcg
caggtcgggcagcgggccgcggaccggggcctgaagcaggtgggcagcctgggctcggcc
aaccacttccttgaggtgcaggcagtggaccgggtgtacgacgccgagaccgcgaccgcg
ttcggcctgcaccagggccaggtgtgcgtgatgatccactgcggctcccgcggcctcggg
catcaggtgtgcaccgaccacgtccgtgtcatggaccagtccctgcgcgcctacggcatc
cacctcccggaccggcaactggcctgcgtacccgttgtctccccaccgggccgcgcctac
ctcggggcgatggcagccgccgccaactacgccagggccaaccgccagctgctcacccag
gccgcgcgtcgcgccttcgccgccgccggggtaggcctggacctggtctacgacgtctcg
cacaacatcgcgaagatcgagagccacgatgtggacggcgtctcgcgccagttgtgcgtc
caccgcaagggcgccacccgtgccctgccgcccggccaccccgacctgccggcggacctc
accagggcggggcagcccgtgatggttccaggcacgatgggcaccgcctcgtacgtgatg
gtcggcaccgtcggcaatgacgcgttctggtcgtccgcccacggtgcgggacgcgtatgg
agccgccaccaggcactgcggcgggtccgcggcgagcagttgggcggcgagctggaggcc
cacggcatcgccgtccgtccggtctcctggcgcgcgctcgccgaggaggcccccgacgcc
tacaaggacgtcgacgcggtcgccaccgccacggaaggcgcggggctggcccggcgggtc
gtccgcctggtgccgctcggagtcgtcaagggatga
DBGET
integrated database retrieval system
