Streptomyces chromofuscus: IPT68_09325
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Entry
IPT68_09325 CDS
T07378
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
schf
Streptomyces chromofuscus
Brite
KEGG Orthology (KO) [BR:
schf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schf03019
]
IPT68_09325 (hrpB)
Enzymes [BR:
schf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IPT68_09325 (hrpB)
Messenger RNA biogenesis [BR:
schf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IPT68_09325 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
Helicase_RecD
nSTAND3
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QOV46080
UniProt:
A0A7M2TBM2
LinkDB
All DBs
Position
2068005..2070575
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AA seq
856 aa
AA seq
DB search
MIRYDALDALPVRTALPALREALDGHGTAVLVAPPGTGKTTLVPLALAGLLGEGPARRVV
VAEPRRIAARAAARRMAWLLGERVGESVGYTVRGERVVGRHARVEVVTTGVLLQRLQRDQ
ELSGVDAVVLDECHERHLDADTVAAFLWDVREALRPELRLVAASATTDAEGWARLLGGAP
VVAAEGASYPVEVVWAPPARPVRPPHGMRVDPALLTHVASVVRRSLAERAGDVLCFLPGV
GEIARVAGQLGDAGDVEVLQVHGRAPAAVQDAVLSPGTRRRVVLATSVAESSLTVPGVRV
VVDSGLAREPRVDHARGLSALTTVRASQAAGRQRAGRAGREAPGAVYRCWAEAEDARLPL
FPAPEIQVADLTAFALQAACWGDPEASGLALLDSPPGGAMAAARDVLRAVGAVDSGGRAT
ERGARLARLGLHPRLGRALLDAAPWVGAERAAEVVALLSEEAPREYGDDLASALRAARRG
GDAYAGRWRTEVRRLRAVVTEFSHPPTSHPRSVEVDTEAAVVAGRGRPPASGGADDAAGI
VAALAFPERVAKADGGSYLMVSGTRAELGDASPLRGAPWIAVAVADRPLGRGHARVLLAA
EVDEEVARLAAGAFRSEGQEVHWAGGDVVARRVERLGAVELAVRPLSDATPGLVRDALLD
GLRREGFGLLRWSRDAEVLRQRLAFLRSHLGEPWPDVSDEALHARVEEWLEPELSRARRR
GDLARIDAGEALARLLPWASGEAARLDELAPERITVPSGSRIRVDYADPERPVLAVKLQE
MFGAQESPALAGVPVLVHLLSPAGRPAAVTADLASFWRGGYRDVRAELRGRYPRHPWPED
PAAAEPTRHTKARLRR
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgttacgacgccctggacgcccttccggtacgcaccgcgctgcccgccctgcgc
gaggccctggacggacacggcacggccgtcctcgtggcacccccgggcacgggcaagacg
acgctggtgccgctcgcgctggcgggactgctcggcgaggggccggcccggcgggtggtc
gtggccgagccgcggcggatcgcggcgcgggcggcggcgcgccggatggcgtggctgctg
ggcgagcgggtcggcgagagcgtcggctacacggtgcgcggggagcgggtcgtcgggcgg
cacgcgcgcgtggaggtcgtcacgaccggtgtgctgctgcagcggctccagcgggaccag
gagctgagcggcgtcgacgcggtggtgctcgacgagtgccacgagcggcatctggacgcg
gacacggtggcggcatttctgtgggacgtacgggaggcgctgcggccggagctgcggctg
gtggcggcgtcggcgacgaccgacgcggagggctgggcccggctgctcggcggggctccg
gtggtcgccgcggagggcgcgtcgtacccggtcgaggtggtgtgggcgccgccggcgcgt
cccgtacggccgccgcacggcatgcgggtcgatcccgcgctgctgacccacgtggcgtcg
gtggtacggcggtcgctggcggagcgggcgggggacgtgctgtgtttcctgccgggggtc
ggggagatcgcgcgggtcgccggacagctcggggacgccggggacgtggaggtgctccag
gtgcacgggcgggcaccggcggccgtgcaggacgcggtgctgtcgccggggacccggcgc
cgggtggtgctggcgacgtctgtggccgagtcgtcgctgacggtgcccggggtgcgggtg
gtcgtcgactcggggctggcccgcgagccgcgggtggaccacgcgcgcgggctgagcgcg
ctgacgacggtacgggcctcgcaggcggccgggcggcagcgggctgggcgggccgggcgt
gaggcgccgggggccgtgtaccggtgctgggcggaggccgaggacgcgcgtctgccgctg
tttccggcgccggagatccaggtggccgacctgacggcgttcgcgctgcaggcggcctgc
tggggcgatccggaggcgtccgggctggcgttgctcgattccccgccgggtggggccatg
gcggcggcgcgggacgtgctgcgggcggtgggggcggtcgactccggtgggcgggcgacg
gagcggggcgcgcggctggctcggctggggctgcatccccggctggggcgggcgttgctc
gacgcggctccgtgggtgggggccgagagggctgccgaggtggtcgccctgctgagcgag
gaggcgcctcgggagtacggggacgatctcgcatcggccctgcgggccgcgcggcgcggc
ggcgacgcctatgccgggcggtggcgtacggaggtccggcggctgcgggccgtcgtcacg
gagttctcccacccgcccacgagtcacccccggtcggtggaggtggacaccgaggccgca
gtcgtggccggacgtggccgtccgcccgcctccggcggggccgacgacgccgccgggatc
gtcgccgcgctcgccttccccgagcgggtcgccaaggccgacggcgggtcgtacctcatg
gtctccgggacccgggcggagctcggggacgcctcaccgctgcggggcgcgccctggatc
gccgtggccgtggccgatcgccccctcggcagggggcacgcgcgtgtgctgctggccgcc
gaggtggacgaggaggtggcccggctcgccgcgggcgccttccggagcgagggccaggag
gtgcactgggccggtggtgacgtcgtcgcacggcgggtcgagcggctcggggccgtcgag
ctggcggtgcggccgctgtcggacgccacgccgggcctggtgcgcgacgcgctgctggac
gggctgcgccgggaagggttcggcctgctgcggtggtcgcgggatgccgaggtgctgcgg
cagcggctggcctttctgcggtcgcacctcggcgagccctggccggacgtgtccgacgag
gcgctgcacgcgcgcgtggaggagtggctggagccggagctgagccgggcgcggcggcgg
ggcgacctggcgcggatcgatgccggggaggcgctcgcccgtctgctgccgtgggcgtcg
ggggaggccgcgcggctcgacgaactggccccggagcggatcaccgtgccgagtgggtcc
aggatccgggtggactacgcggacccggaacggcccgtcctggccgtgaagctgcaggag
atgttcggggcgcaggagtcgccggccctcgcgggcgtccccgtgctggtgcatctgctc
tcccccgccggccggcccgccgccgtcactgccgacctcgcctcgttctggcggggcggc
tacagggacgtacgggcggagctgcggggccgctaccccaggcatccgtggcccgaggac
cccgccgccgcggagcccacccggcacaccaaagcgcggctcaggcggtga
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