Streptomyces chromofuscus: IPT68_12460
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Entry
IPT68_12460 CDS
T07378
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
schf
Streptomyces chromofuscus
Pathway
schf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPT68_12460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schf03019
]
IPT68_12460
03009 Ribosome biogenesis [BR:
schf03009
]
IPT68_12460
Enzymes [BR:
schf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IPT68_12460
Messenger RNA biogenesis [BR:
schf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IPT68_12460
Ribosome biogenesis [BR:
schf03009
]
Prokaryotic type
rRNA processing factors
IPT68_12460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QOV46634
UniProt:
A0A7M2TEI3
LinkDB
All DBs
Position
complement(2776190..2780620)
Genome browser
AA seq
1476 aa
AA seq
DB search
MLEPIEPTEGSELNTPSDTLPPRRRRRAASRPAGPPAATSETPTETVTPAIPAADASDLA
TGDQPPAEAAELASTDLSSAASEEAGDVEEAVEASEVAEVAEVPEISGAEETTEVAADAA
PAGRARRRATRRASAPTGSPASADAAETVVPVAAPSAAEPVDESAVAHVVEEPAPPRRRR
ATRRASAPAGSPEPTRAAETVTVSAPAEAAAVVAQEPAQVEEPASVEEAAPAARTRRRAT
RRVSTPAGTPAAAEAVQPEDAAAAPAVEPHAEAAVEEAEEAAPRRVRRRATRRVSAPAQA
SAEAAVEAPAEATASTTDEPVEAATEQADESAAPRRTRRRRGAAEPVAVAAEPAEQPAAV
TASAEATTQAEAPAAAEPGPVSVPEPAEAVGEHSGAPRRARRRVVRKAATGFAAPAQPEA
AEAEALRPPARPAVAVFQPPVFTEPRFQTPQRAAAEAAAEAAEEAPEAEELSEEPAGARR
RRRRRGAAAEESEPQAVDTVVDEEAREAEEPDEAAETLAEDEEGEETGSRRRRRRGGRRR
RRGESGDYAEGDTEELAAEQAAQDVEDTAEQVEEDAEEDDRDAEESAGSSTSSRRRRRRR
RRAGDAGPDAEPTADDPERTVVKVREPRALREKGAEPSDEVQSIKGSTRLEAKKQRRREG
REQGRRRVPIITEAEFLARREAVERVMIVRQHGDRTQIGVLEDGVLVEHYVNKEQSTSYV
GNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVL
VQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPED
AGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKSGNAPTLLYGEPDMTVRVVRDIFN
EDFSKVIVSGPEAWETIHGYVAHVAPDLAGRLQKWTSEVDVFATYRIDEQLAKALDRKVW
LPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGII
VIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSET
CVHCNGRGVIVHLDQAATTGGGGKRKKRARVGAEQPEHTHEAVAGGIVEVGETAEEEAES
ESEVAAEVAEPVALPAPEFQPDEELYSSIAEAEAAASRGRSRRRASRRVSAPAGAPAPKA
ESDGAGVTAPTAQDVTAEEEAARPVRPEPAAAAHAEPVAVEDPVIEAPATAEPVEDAAPK
GRTRRRATRKVSAPAGSPASASAEAAVMTVAETAPAAAETPEVAETPSAAQPVQAEAPAE
AAAPARPRRRAVRKATAPTASEEAAVVVVPSAEAPAQTEAPVAEQAAHEAEQALVEAREA
AAEAVSGEAAEGEAEGDESAPARKTARKTAKKATAKKAATKKTAAKKTAAKKATAKKAAK
STAAKTTAAKAAKATSKKTAAAEQSQPTVSVSTDEG
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagccgatcgaacccactgagggttccgaactgaacacacccagcgacaccctg
ccgccgcgtcgtcggcgccgtgccgcgtcccgaccggcgggtccgcccgccgccacgtcc
gagacgccgacggagacggtcacgccggccataccggccgccgacgcctccgacctggcc
acgggcgaccagccgcccgccgaggccgccgagctcgcgtcgaccgacctgtcctccgcg
gcctccgaggaggccggggacgtcgaggaagccgttgaggccagcgaggtcgccgaggtg
gccgaggtccccgagatctccggggccgaggagaccactgaggtcgccgcggatgccgcg
cccgccgggcgtgcgcgccgccgcgcgacccgtcgggcctccgcgcccaccggttccccg
gcgtccgccgatgctgccgagaccgtggtgccggtcgccgccccgtccgccgccgagccg
gtggacgagagcgcggtcgcccacgtcgtcgaggagcccgcgccgccgcgccgccgccgg
gccacgcgccgtgcgtcggcgcccgccgggtcccccgagcccacccgggccgccgagacc
gtcaccgtgtccgcgccggccgaagccgccgccgtcgtcgcacaggagcccgcacaggtc
gaggagcccgcgtcggtcgaggaggccgcgcccgccgcgcgtacgcgccgtcgggcgacc
cgtcgggtgtccacgcccgccgggacgccggccgccgccgaggccgtgcagccggaggac
gccgcagcggcgcccgccgtcgagccgcacgccgaggccgccgtcgaggaggccgaggaa
gccgcaccgcgccgggtgcgccgccgcgccacgcgccgcgtgtccgcgcccgcccaggcg
tccgccgaggcagccgtcgaggcgcccgccgaggccaccgcgagcaccacggacgagccc
gtcgaggccgccaccgagcaggccgacgagagcgccgccccgcggcgtacgcgccgtcgc
cgtggtgccgccgagcccgtcgccgtggctgccgagcccgccgagcagcccgccgccgtg
accgcgtccgccgaggccacgacgcaggccgaggcgcccgccgcggccgagcccgggccc
gtctccgtcccggagcccgccgaagccgtcggtgagcacagcggcgccccgcgtcgtgcc
cggcgccgggtcgtgcgcaaggccgcgaccgggttcgccgcgcccgcgcagcccgaggcc
gccgaggccgaggcgctgcgaccgccggcgcggcccgcggtcgcggtgttccagccgccg
gtgttcaccgagccgaggttccagacgccccagcgggccgccgccgaagcggccgccgaa
gcggcggaagaggcccccgaggccgaggagttgtccgaggagccggccggggcgcggcgt
cgccgccggcgccgtggtgccgctgccgaggagagcgagccgcaggccgtcgacaccgtc
gtggacgaggaggcccgggaggccgaggagccggacgaggccgccgagaccctcgccgag
gacgaggagggcgaggagaccgggtcgcgtcgccgccgtcgtcgcggtggccggcgccgc
cgccggggcgagtccggtgactacgccgagggcgacaccgaggaactcgccgccgagcag
gccgcgcaggacgttgaggacaccgcggagcaggtcgaggaggacgccgaggaggacgac
cgggacgccgaggagtccgcgggctcgtccaccagcagccgccgtcgccgccgtcgtcgt
cgccgggccggggacgccggcccggacgccgagccgaccgccgacgaccccgagcgcacg
gtcgtcaaggtccgcgagccgcgagccctgcgggagaagggtgccgagccgtccgacgag
gtgcagtccatcaagggctccacgcgtctggaggccaagaagcagcgccgccgggaaggc
cgtgagcagggccgccgccgggtgccgatcatcacggaggccgagttcctggcgcgccgc
gaggccgtcgagcgcgtgatgatcgtgcgccagcacggcgaccgcacgcagatcggcgtc
ctggaggacggcgtgctcgtcgagcactacgtcaacaaggagcagtcgacctcgtacgtc
ggcaacgtctacctcggcaaggtgcagaacgtgctgccgtcgatggaggccgccttcatc
gacatcggcaagggccgcaacgccgtgctctacgccggtgaggtcaacttcgaggcactg
ggcatggccaacgggccgcgccgcatcgaatccgccctgaagtcgggccagtcggtcctc
gtgcaggtcaccaaggacccgatcgggcacaagggcgcccgtctgaccagccaggtctcc
ctccccggccgctacctcgtgtacgtgcccgagggctcgatgaccgggatcagccgcaag
ctgcccgacaccgagcgggcgcggctgaagaccatcctcaagaagatcgtccccgaggac
gcgggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggacgagctgcgccgcgac
gtcgagcggctccaggcgcagtgggaggacatccagaagaaggccaagagcggcaacgcg
ccgactctgctgtacggcgagccggacatgaccgtccgggtcgtgcgcgacatcttcaac
gaggacttctccaaggtcatcgtgagcggcccggaggcctgggagaccattcacggctac
gtcgcccacgtggcgccggacctcgccgggcggctgcagaagtggacctccgaggtcgac
gtcttcgccacgtaccggatcgacgagcagctcgccaaggcgctggaccgcaaggtctgg
ctgcccagcggcggttcgctggtgatcgaccggaccgaggcgatggtcgtggtcgacgtc
aacaccggcaagttcaccggccagggcggcaacctggaggagacggtcaccaggaacaac
ctggaggcggccgaggagatcgtgcgccagctcaggctgcgcgacctcggcggcatcatc
gtgatcgacttcatcgacatggtgctggagtccaaccgggacctggtgctgcggcgcctg
ctggagtgcctgggccgggaccgcaccaagcaccaggtcgccgaggtgacctcgctgggc
ctggtccagatgacccgcaagcgggtcgggcagggcctgctggagtcgttctccgagacc
tgcgtccactgcaacgggcgcggcgtgatcgtgcacctggaccaggcggccaccaccggt
ggcggcggcaagcgcaagaagcgcgcgcgggtcggtgccgagcagccggagcacacgcac
gaggccgtggccggcggaatcgtcgaggtcggcgagaccgccgaggaggaggcggagagc
gagtccgaggtcgcggccgaggtcgccgagccggtggcgctgcccgcaccggagttccag
ccggacgaggagctgtacagcagcatcgccgaggccgaggccgcggcgtcacgcggccgg
tccaggcgccgggcgagccgtcgggtgtccgctccggcgggcgcccccgcgcccaaggcc
gagtccgacggggccggcgtcacggcgcccacggctcaggacgtgacggccgaggaggag
gccgcgcgtccggtgcggccggagcccgccgccgcggcgcacgccgagcccgtggccgtc
gaggacccggtgatcgaggccccggcaaccgcggagcccgtcgaggacgcagcgcccaag
ggccgtacgcgccgtcgtgccacccgcaaggtgagcgccccggcgggttccccggcctcg
gcgtcggcggaggcggcggtcatgacggtcgccgagaccgcgccggccgcggcggagacg
ccggaggtcgccgagacgccgtccgcggcgcagccggtgcaggccgaggcgcccgccgag
gccgccgctccggcccgtccgcgccgccgtgcggtccgcaaggccaccgcgccgaccgcg
tcggaggaggcggccgtggtggtcgtcccgtcggcggaggcgccggcgcagaccgaggct
ccggtcgccgagcaggccgcccacgaggccgagcaggctctcgtggaggccagggaggcc
gccgccgaggcggtgtccggcgaggctgccgagggcgaggccgagggcgacgagtccgct
ccggcgaggaagacggcccgcaagacggccaagaaggccacggcgaagaaggccgccacc
aagaagaccgcggccaagaagacggccgcgaagaaggcgacggccaagaaggcggcgaag
tccaccgccgccaagacgaccgccgccaaggccgccaaggcgacgtcgaagaagaccgcg
gcggccgagcagtcccagccgaccgtctcggtctcgaccgacgaaggctga
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