Streptomyces changanensis: NRO40_06650
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Entry
NRO40_06650 CDS
T09753
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
schg
Streptomyces changanensis
Brite
KEGG Orthology (KO) [BR:
schg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schg03019
]
NRO40_06650 (hrpB)
Enzymes [BR:
schg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NRO40_06650 (hrpB)
Messenger RNA biogenesis [BR:
schg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NRO40_06650 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_22
AAA_30
AAA_19
AAA
Motif
Other DBs
NCBI-ProteinID:
UUS34730
LinkDB
All DBs
Position
1501088..1503568
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AA seq
826 aa
AA seq
DB search
MRLREEASALPVRTALPALERALDGHGAAVLCAPPGTGKTTLVPLALAGRGARVVVAEPR
RIAARAAARRMAWLLGEPVGCRVGFTVRGERVVTRGTVVEVVTTGVLLQRLQRDQELAGV
DVVVLDECHERHLDADTAAAFLLDVRAALRPELRLVAASATTDAEGWSRLLGGAPVVEAE
GTAHPVEVVWAPPASSVRPPHGMRVDPALLAHVASVVRRALAERSGDVLCFLPGVGEIAR
VAGLLAGLADVEVLQVHGRAPAAVQEAVLSPGRGRRVVLATSVAESSLTVPGVRVVVDSG
LAREPRTDHARGLGSLTTVRASRAASRQRAGRAGREAPGVVYRCWTEAEDGRLPRFPAPE
IQVADLAAFALQAAVWGDPDASGLALLDPPPAGALAAARSVLAAVGAVDAAGRATERGVR
MSRLGLHPRLARALLDGAPAVGARRAAEVVALLSEEPPREYGDDLAAAWRAARRGGDAYG
ARWRQEARRLTGQLDGAGTPPDGLPDDAVVGTVTSLAFPERVARAKGAGAFLMASGTGAE
LGDGSRLRAAPWLAVAVADRPPHAASARVRLAAVVDEETARSAARHLLAAGEEVRWEDGD
VVARSVERLGAIETAVRPLRDPDPALVRAALLEGLRREGLGLLRWSRESEELRQRLAFVH
RVVGAPWPDVSDAALLDRAEEWLDPELSRARRRGDLGRIDAGQCLQRLLPWASGDAARLD
VLAPERIEVPSGSRIRVEYGGPQPVLAVKLQEMFGLARTPRVAGVPVLVHLLSPAGRPAA
VTADLESFWREGYRAVRAELRGRYPRHPWPEDPATAVPTRRANPRR
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgcgactgcgggaggaggcgtcggccctcccggtgcgcaccgcgctgccggccctggag
cgggcgctcgacgggcacggggccgcggtgctgtgcgcgccgcccggcacggggaagacc
acgctcgtgccgctcgcgctcgccgggcgcggcgcgcgggtcgtcgtcgccgagccacgg
cggatcgcggcgcgggcggcggcccggcggatggcgtggctgctgggcgagccggtgggc
tgccgggtgggcttcacggtgcgcggcgagcgggtggtgacgcgcgggacggtcgtcgag
gtggtgacgacgggcgtgctgctccagcggctccagcgggaccaggagctggccggggtg
gacgtggtggtcctggacgagtgtcacgagcggcacctggacgccgacacggccgccgcg
ttcctgctggacgtgcgcgccgcgctgcggcccgagctgcgactggtggccgcctcggcg
acgaccgacgcggagggctggtcccggctgctgggcggcgcgccggtggtggaggccgag
gggacggcccatccggtggaggtggtgtgggccccgccggcgtcgtccgtgcggccgccg
cacgggatgcgcgtggacccggcgctcctggcgcacgtggcgtcggtggtgcggcgggcg
ctggcggagcgctccggcgacgtgctgtgcttcctgcccggtgtcggggagatcgcgcgg
gtggcgggtctcctggcggggctcgcggacgtcgaggtgctccaggtccacggccgggcg
ccggcggcggtccaggaggcggtgctctcccccggccggggccgccgggtggtgctggcg
acgtcggtggccgagtcgtccctgaccgtgccgggcgtgcgggtggtggtggactcgggg
ctggcccgtgagccgcggacggaccacgcgcggggcctcggctcgctgaccacggtgcgg
gcgtcgagggcggcctcccggcagcgggcgggccgggcggggcgcgaggcgccgggcgtg
gtgtaccgctgctggacggaggcggaggacgggcggctgccgcggttcccggctcccgag
atccaggtggcggacctggcggcgttcgcgttgcaggcggccgtctggggtgatccggac
gcgtcgggcctggcgctgctggacccgccgcccgcgggtgcgctggccgcggcgcggtcg
gtgctggcggcggtcggcgcggtggacgcggcgggccgggcgacggagcggggcgtacgg
atgtcccgtctgggcctgcatccgcggctggcccgcgcgctgctggacggggcgcccgcc
gtgggggcgcggcgcgccgcggaggtggtggcgctgctgagcgaggagccgccgcgcgag
tacggcgacgacctggctgccgcgtggcgcgcggcgcggcggggcggtgacgcgtacggg
gcgcggtggcggcaggaggcgcggcggctgacgggccagctggacggggccgggacgccg
ccggacggcctgccggacgacgccgtcgtcgggacggtcacgtcgctggcgttcccggag
cgggtggcccgggccaagggcgccggggcgttcctgatggcgtcggggacgggcgccgag
ctcggggacgggtcccgcttgcgggcggccccgtggctggcggtcgccgtcgcggaccgg
ccgccgcacgccgcgtctgcacgggtgcggctcgccgcggtggtggacgaggagaccgcc
cggtcggccgcccggcacctgctcgcggcgggtgaggaggtgcggtgggaggacggtgac
gtcgtcgcgcggtccgtggagcggctgggcgctatcgagacggccgtacgaccgctgcgg
gacccggatccggcgctggtgcgcgccgccctcctggaggggttgcggcgcgaggggctc
gggctgctgcgctggtcgcgggagtcggaggagctacggcagcggctggcgttcgtgcac
cgggtggtgggcgcgccgtggcccgacgtgtcggacgccgcgctgctggaccgcgcggag
gagtggctggacccggagctgtcacgggcgcggcgccggggggacctggggcggatcgac
gcggggcagtgcctgcagcggctgctgccatgggcgagcggagacgcggcgcgtctcgac
gtgttggcgccggagcggatcgaggtgccgagcggctcgcggatccgcgtggagtacggg
ggtccgcagccggtgctggcggtgaagctgcaggagatgttcgggctggcgcggacgccg
cgggtcgcgggggtgcccgtcctggtgcacctgctgtcgccggcgggccggccggccgcc
gtcaccgccgacctggagtcgttctggcgggagggctaccgggccgtgcgtgccgagctg
cgcgggcgctacccgcggcacccgtggccggaggacccggccacggccgtaccgacgcga
cgcgccaacccgcggcgctga
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