Streptomyces changanensis: NRO40_14120
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Entry
NRO40_14120 CDS
T09753
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
schg
Streptomyces changanensis
Brite
KEGG Orthology (KO) [BR:
schg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schg03019
]
NRO40_14120 (hrpA)
Enzymes [BR:
schg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NRO40_14120 (hrpA)
Messenger RNA biogenesis [BR:
schg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NRO40_14120 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_16
NACHT
DUF6139
TsaE
PhoH
AAA_25
SRP54
Motif
Other DBs
NCBI-ProteinID:
UUS31851
LinkDB
All DBs
Position
3201632..3205567
Genome browser
AA seq
1311 aa
AA seq
DB search
MSTSFADLQTLLAEVSLRDAHRLGRRLEGARRIRKPEARQAVLDEIAAEAARGAARTAER
ASRVPAVTYPQQLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGM
IGHTQPRRIAARTVAERVAQELGTPLGEAVGWKVRFTDQVGSDTFVKLMTDGILLAEIQT
DRDLRAYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDPERFSRHFGDA
PIVEVSGRTFPVEVRYRPLLEEDSDDADRDQITAICDAVDELQAEGPGDVLVFLSGEREI
RDTADALLKRKLRNTEVLPLYARLSHAEQHRVFQAHPGRRIVLATNVAETSLTVPGIKYV
IDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFLSRPEF
TDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGAIDPAQKDPK
KRLTPAGRKLAQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPAEKQAQADQ
SHARFKDETSDFLAFLNLWRYVREQQKELSSSAFRRMCKAEYLNYLRIREWQDIYSQLRT
VAKQMGIHLNEEDADEQRVHVSLLAGLLSHVGMKDVKDGAKNEYLGARSAKFAIFPGSAL
FKKPPRFVMSAELVETSRLWARVNARIEPDWIEPLAGHLLKRTYSEPHWEKDQSAVMAYE
KVTLYGVPIVTDRKVNYGRIDPEVSRELFIRHALVEGDWRTHHKFFADNRRLLTEVEELE
HRARRRDILVDDETLFDFYDQRVPEHVVSGAHFDSWWKHKQRDEPELLDFEREMLINDRA
GAVTKDDYPDTWRQGALKFRVTYQFEPGADADGVTVHVPLQVLNQVVDENFDWQIPGLRE
EVVTELIRSLPKPIRRNYVPAPNFARRFLEQAAPGQEPLTETLARALQRMVGVPVSADDF
DWAKVPDHLRITFRIVDERRRKLAEDKDLEELKLRLRPKARQALSKAAAAATAGPAGSGG
SLERTGLTEWTIGTLTRVFETRRAGQPVKAYPALVDEGTTVAVRLFDTEAEQARAMWRGT
RKLIMLNIPVNPAKFASDRLTNQQKLALSRNPHGSVQALFDDCATAAADRLIAEHGGPAW
DEESFRKLYDKVRADLVELTIRTVDQVQQILAAWQACERRLKATNSLTLVNNVRDVREQL
AALVPAGFVTRTGLRRLPDLMRYLVAVDRRLQQMPTSVQRDTTRMEKVHEMQDEYAWLLE
QLPKGRPVPQEVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgacctccagaccctgctggccgaggtctcgctgcgcgacgcg
caccggctcggccgccgtctcgaaggcgcccgccgcatccgtaagcccgaggccaggcag
gccgtcctggacgagatcgccgccgaggcggcgaggggagccgcccgcaccgccgagcgg
gcgtcccgcgtgcccgcggtcacgtacccgcagcagctgccggtcagccagaagaaggac
gagatcgcggaggcgatacgcgaccaccaggtcgtgatcgtcgccggtgagaccggctcc
ggcaagaccacgcagatcccgaagatctgcctggagctcggccgcggcgtgcgcggcatg
atcgggcacacgcagccgcggcggatcgcggcccgcacggtcgccgagcgggtggcgcag
gagctggggacgccgctgggcgaggcggtcggctggaaggtccgcttcacggaccaggtc
ggttccgacacgttcgtgaagctgatgacggacggcatcctgctcgccgagatccagacc
gaccgcgacttgcgcgcgtacgacacgatcatcatcgacgaggcccacgaacgcagcctc
aatatcgacttcctcctgggctacctggcccagctgctgccgcggcgccccgacctcaag
gtcgtgatcacctccgcgacgatcgaccccgagcggttctcccggcacttcggcgacgcg
ccgatcgtcgaggtcagcggccggacgttcccggtggaggtccgctaccgcccgctcctc
gaagaggactccgacgacgcggaccgcgaccagatcaccgcgatctgcgacgccgtcgac
gagctccaggccgaggggccgggcgacgtcctcgtcttcctctccggtgagcgcgagatc
cgcgacaccgcggacgcgctgctcaagcggaagctgcggaacaccgaggtgctcccgctg
tacgcgcggctctcccacgccgagcagcaccgcgtcttccaggcgcacccggggcgccgg
atcgtcctcgcgacgaacgtcgccgagacgtcgctgacggtccccggcatcaagtacgtc
atcgacccgggcacggcccggatctcccggtacagccaccgcaccaaggtgcagcggctg
ccgatcgaaccggtcagccaggccagcgccaaccagcgcaagggccgctgcggccgcacc
tcggacggcatctgcatccgcctgtacagcgaggacgacttcctctcacgcccggagttc
acggacgcggagatcctccggacgaacctcgcctccgtcatcctgcagatgacggcggcc
ggtctcggcgacatcgagaagttccccttcatcgacccgccggaccaccgcaacatccgc
gacggcgtgcagctcctccaggagctcggcgcgatcgaccccgcgcagaaggacccgaag
aagcggctgacgccggcgggccgcaagctggcgcagctgcccgtcgacccgcgcctggcc
cggatggtgctggaggccgaccggaacggctgcgtccgtgaggtcatggtcatcgcggcc
gccctgtccatccaggacccgcgcgagcggcccgccgagaagcaggcgcaggccgaccag
agccacgcccggttcaaggacgagacgtcggacttcctcgccttcctgaacctctggcgg
tacgtccgcgagcagcaaaaggagctgtcgtcgtcggcgttccgccgcatgtgcaaggcg
gagtacctcaactacctgcgcatccgcgagtggcaggacatctacagccagctgcgcacg
gtcgccaagcagatggggatacacctcaacgaggaggacgccgacgagcagcgggtccac
gtctcgctcctcgccggcctcctgtcccacgtcggcatgaaggacgtcaaggacggcgcg
aagaacgagtacctcggtgcccgcagcgccaagttcgcgatcttccccgggtcggcgctc
ttcaagaagccgccgcgcttcgtcatgtccgccgagctcgtcgagacgtcccggctgtgg
gcgcgggtcaacgcccgcatcgagcctgactggatcgagccgctcgccgggcacctgctg
aagcgcacgtactccgagccgcactgggagaaggaccagtcggccgtcatggcgtacgag
aaggtgacgctgtacggcgtgccgatcgtcaccgaccgcaaggtgaactacggccgcatc
gacccggaggtgtcgcgagagctgttcatccgccacgcgctcgtggagggcgactggcgc
acgcaccacaagttcttcgcggacaaccgcaggctgctcaccgaggtcgaggagctggag
caccgggcacggcgccgcgacatcctcgtcgacgacgagacgctgttcgacttctacgac
cagcgggtgcccgagcacgtggtgtccggcgcccacttcgactcgtggtggaagcacaag
cagcgggacgagccggaactgctcgacttcgagcgcgagatgctcatcaacgatcgggcc
ggggccgtcaccaaggacgactaccccgacacgtggcggcagggcgcgctgaagttccgc
gtgacgtaccagttcgagccgggcgcggacgccgacggcgtcaccgtccacgtcccgctc
caggtcctcaaccaggtcgtggacgagaacttcgactggcagatcccgggcctgcgcgag
gaggtcgtgacggagctgatccgttcgctgccgaagccgatccgccgcaactacgtgccg
gcgccgaacttcgcgcggaggttcctggagcaggccgcaccggggcaggagccgctgacg
gagaccctcgcccgcgcactgcagcgcatggtgggcgtgccggtctccgcggacgacttc
gactgggcgaaggtccccgaccacctgcggatcacgttccggatcgtcgacgagcggcgc
cgcaagctcgccgaggacaaggacctggaggagctgaagctgcggctgcgcccgaaggcc
cggcaggccctgtcgaaggccgcggcggccgcgacggcgggcccggcgggctcgggcggc
tcgctggagcgcaccggcctgacggagtggacgatcggcacgctgacgcgggtcttcgag
acgcgcagggccggccagccggtgaaggcgtacccggccctcgtcgacgagggcacgacg
gtcgccgtccggctcttcgacaccgaggccgagcaggcgcgggcgatgtggcggggcacc
cggaagctcatcatgctgaacatcccggtgaacccggcgaagttcgcctccgaccggctg
acgaaccagcagaagctcgccctgtcgcgcaacccgcacggctccgtgcaggcgctgttc
gacgactgcgcgaccgccgcggcggaccggctgatcgccgagcacggcggccccgcctgg
gacgaggagtccttccgcaagctgtacgacaaggtccgtgccgacctggtggagctgacg
atccgtacggtcgaccaggtccagcagatcctggccgcctggcaggcgtgcgagcgccgg
ctgaaggccacgaacagcctcaccctggtgaacaacgtgcgggacgtccgcgagcagctg
gcggccctcgtgccggccggcttcgtgacgaggacggggctgcggcgcctgccggacctg
atgcgctacctggtggcggtggaccgccgcctgcagcagatgccgacatccgtgcagcgc
gacacgacgcgcatggagaaggtccacgagatgcaggacgagtacgcctggctcctggag
cagctgccgaagggccggccggtgccgcaggaggtcctcgacatccgctggatgatcgag
gagctgcgcgtcagctacttcgcgcacgcgctgggcacggcgtatcccgtctcggacaag
cggatcgtgaaggcgatcgacgcggcggcgccgtga
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