Streptomyces changanensis: NRO40_17225
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Entry
NRO40_17225 CDS
T09753
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
schg
Streptomyces changanensis
Brite
KEGG Orthology (KO) [BR:
schg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
schg03016
]
NRO40_17225
Enzymes [BR:
schg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NRO40_17225
Transfer RNA biogenesis [BR:
schg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NRO40_17225
Prokaryotic type
tRNA splicing ligases
NRO40_17225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UUS32380
UniProt:
A0ABY5N8N8
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All DBs
Position
3857392..3858585
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AA seq
397 aa
AA seq
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MSYVEVPGAKVPIRMWTDPASVEDGALRQLRNTATLPWIKGLAVMPDVHYGKGATVGSVI
AMRDAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSPLRSGIERAIPVGRAMHDEMVDPA
RVHGVPATGWDDLWARFDGIAEEVRFRQERAARQMGTLGGGNHFVEVCLDTTGAVWLMLH
SGSRNIGKELAEHHIGVARRLPHNQDLVDRDLAVFVAGTPEMTAYRGDLFWAQEYARRNR
TLMMGLLKDVVRKEFKKAGVTFEREISCHHNYVAEERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRRMSRTAAKRRFSTRDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtcgaagtgcccggggcgaaggtgcccatccggatgtggacggacccggcg
tccgtggaggacggcgcgctgcggcagctgcggaacaccgccacgctgccgtggatcaag
ggcctcgccgtcatgcccgacgtgcactacggcaagggcgccacggtcggctccgtgatc
gcgatgcgcgacgcggtgtgcccggcggcggtcggggtcgacatcggctgcggcatgtcc
gccgtgcggacgtcactcacggcgaacgacctgccgggcgacctgtcgccgctccggtcc
ggcatcgagcgggccatcccggtcggccgcgccatgcacgacgagatggtcgaccccgcg
cgggtccacggggtcccggccaccgggtgggacgacctgtgggcgcgcttcgacggcatc
gccgaggaggtcaggttccgtcaggagcgggccgcccggcagatgggcaccctcggcggc
ggcaaccacttcgtcgaggtctgcctcgacaccaccggtgccgtgtggctgatgctgcac
tccggctcccgcaacatcggcaaggagctggccgagcaccacatcggcgtcgcacggcgg
ctgccccacaaccaggacctcgtcgaccgcgacctcgcggtgttcgtcgccggcacgccg
gagatgaccgcctaccgcggtgacctgttctgggcgcaggagtacgcccggcgcaaccgc
acgctcatgatggggctcctgaaggacgtcgtccgcaaggagttcaagaaggccggcgtg
accttcgagcgcgagatctcctgccaccacaactacgtggcggaggagcggtacgacggc
atggacctgctggtcacccgcaagggcgccatccgcgcgggcagcggcgagtacgggatc
atcccggggtcgatgggcaccggctcgtacatcgtgaaggggctcggcaacgagaagtcc
ttcaactccgcctcgcacggggccggccggcgcatgagccggaccgccgcgaagcgccgc
ttctccacccgggacctggaggagcagacgcgcggggtggagtgccgcaaggactccggc
gtcgtcgacgagatcccgggcgcgtacaagccgatcgagcaggtcatcgaccagcagcgc
gacctggtcgaggtcgtggcgaagctgaagcaggtcgtctgcgtgaagggctga
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