Streptomyces changanensis: NRO40_17860
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Entry
NRO40_17860 CDS
T09753
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
schg
Streptomyces changanensis
Pathway
schg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
schg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NRO40_17860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schg03021
]
NRO40_17860
03400 DNA repair and recombination proteins [BR:
schg03400
]
NRO40_17860
Enzymes [BR:
schg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NRO40_17860
Transcription machinery [BR:
schg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NRO40_17860
DNA repair and recombination proteins [BR:
schg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NRO40_17860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
UUS32490
LinkDB
All DBs
Position
3998916..4002824
Genome browser
AA seq
1302 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRQRDLPSLEAHVSVERQQIEQRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVKGE
GRAFNSTAEAIMAFDARELSLQAKVDIRFPIGSVPPRGWTPPVEEEGDEGLGPWQQGDSF
RLRTTLGRALFNELLPEDYPFVDYTVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFF
WATRSGVTVAISDVVVPEAKKAIVAEYEARDEKVQKQYERGLITKDERTQELIQIWTEAT
NKVADAMNENFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFRE
GLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLRIG
SKDEAGILRKAEDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDQLIAAGVEQVKTR
SVLTCESAVGTCAYCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGD
DITQGLPRVVELFEARSPKGMAPIAEASGRVRIEETEKTKKIVITPDDGSDETAYPISKR
ARVLVGEGDHVEVGQKLTVGTENPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHI
EIIIRQMLRRVTIIESGDAELLPGELVERSRFEQENRRVVTEGGHPASGRPQLMGITKAS
LATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEP
TEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggccaccgcggacgacatc
cgacagtggtcccacggcgaagtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcggtgtggcgtc
gaggtcacccgcgccaaggtgcgccgcgagcggatgggccacatcgagctcgccgccccc
gtcacccacatctggtacttcaagggcgtcccgtcccggctcggctacctgctggacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gaggagcgccgccagcgcgacctgccgtcgctggaggcccacgtctccgtcgagcgccag
cagatcgagcagcgccgcgacgccgacctcgaggcccgcgccaagaagctcgagaccgat
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtccgcgagggc
gccgagcgcgagatgaagcagctgcgcgaccgcgcccagcgcgagatcgaccgtctcgac
gaggtgtggagccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttcgacggctcgatgggcgccgccgcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgcgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagaccagcaacagccccaagggcatggtgctggactgcgtcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctcttcgacaacggccgccgcggtcgcccggtcaccggtcccggtaaccgcccgctgaag
tccctcagcgacatgctgaagggcaagcagggtcgcttccgtcagaacctgctcggcaag
cgagtcgactactcggcgcgttccgtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggcgaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctccgcggaggcgcaggccgaggcgcgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtcccgtcaccatgccgacccaggac
atggtgctgggcctcttcttcctcaccacggacgaggaggagcgcgaggtcaagggtgag
ggccgcgccttcaactcgaccgccgaggcgatcatggccttcgacgcccgggagctctcg
ctccaggcgaaggtcgacatccgcttcccgatcggctccgtcccgccccgcggctggacc
ccgccggtcgaggaggagggtgacgagggcctcggtccctggcagcagggcgactcgttc
cgtctgcggacgaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccg
ttcgtcgactacacggtcggcaagaagcagctctccgagatcgtcaacgacctcgccgag
cgctaccccaaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttcttc
tgggccacccgctccggcgtcaccgtcgccatctcggacgtcgtcgtcccggaggcgaag
aaggcgatcgtcgccgagtacgaggcgcgcgacgagaaggtccagaagcagtacgagcgt
ggtctgatcaccaaggacgagcgcacgcaggagctcatccagatctggaccgaggcgacc
aacaaggtcgccgacgcgatgaacgagaacttcccgaagacgaacccgatcttcatgatg
gtgaactcgggcgctcgaggaaacatgatgcagatgcgccagattgcgggtatgcgcggt
ctggtgtcgaacgccaagaacgagacgatcccgcgtccgatcaaggcgtccttccgcgag
ggcctgtccgtgctggagtacttcatctccacccacggtgcccgtaagggtctggccgac
accgccctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcag
gacgtgatcatccgcgaggaggactgcggcaccgaccgcggtctgaagctgcggatcggt
tcgaaggacgaggccggcatcctgcgcaaggcggaggacgtcgagacctccgtgtacgcc
cggatgctcgccgaggacgtcgtcgtggacggcaaggtcatcgcgccggccaacgtcgac
ctcggtgacgtgctcatcgaccagctcatcgcggcgggtgtcgagcaggtcaagacccgc
tcggtcctcacctgcgagtccgcggtcggcacgtgtgcgtactgctacggccgttcgctc
gcgaccggcaagctggtcgacatcggcgaggcggtcggcatcatcgccgcccagtccatc
ggtgagcccggtactcagctgacgatgcgtaccttccacaccggtggtgtggccggtgac
gacatcacgcagggtctgccgcgtgtcgtcgagctcttcgaggcccgctccccgaagggc
atggccccgatcgccgaggcgtcgggccgggtccgcatcgaggagaccgagaagaccaag
aagatcgtcatcacgccggacgacggcagcgacgagacggcctacccgatctcgaagcgc
gcccgtgtcctggtcggcgagggcgaccacgtcgaggtgggccagaagctcaccgtgggt
accgagaacccgcacgacgtgctgcgcatcctcggtcagcgggccgtccaggtccacctg
gtcggcgaggtgcagaaggtctacaactcgcagggcgtgtcgattcacgacaagcacatc
gagatcatcatccggcagatgctccgccgcgtgacgatcatcgagtccggcgacgcggag
ctgctgccgggcgagctcgtcgagcgctcgcgcttcgagcaggagaaccgtcgtgtggtc
acggaaggcggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcgtcg
ctggcgacggagtcgtggctgtccgcggcctccttccaggagacgaccagggtcctgacg
gacgcggcgatcaacgccaagtccgactccctgatcggcctcaaggagaacgtcatcatc
ggtaagctcatcccggccggtacgggcctgtcccgctaccgcaacatccgggtcgagccg
accgaggaggccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcg
ccgttcggcaccggctccggccaggccgttccgctggaggactacgactacggtccgtac
aaccagtaa
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