Streptomyces changanensis: NRO40_20420
Help
Entry
NRO40_20420 CDS
T09753
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
schg
Streptomyces changanensis
Pathway
schg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
schg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NRO40_20420 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
schg03400
]
NRO40_20420 (ligD)
Enzymes [BR:
schg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NRO40_20420 (ligD)
DNA repair and recombination proteins [BR:
schg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NRO40_20420 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
UUS32949
LinkDB
All DBs
Position
complement(4568622..4569512)
Genome browser
AA seq
296 aa
AA seq
DB search
MTPITEVEGRRLPLSNLDKVIHPATGTTKGELLHYYATVAEALLPHLRDRPLSFLRYPDG
PDGQLFFTKNPPPGTPDWVRTAPVPRTEDPGARQVVVEDLPSLMWAANLVVEFHTPQWRA
REPAVADRMVFDLDPGAPATVVECCRVALWLRERLARDGLTAYAKTSGAKGLHLYVPVEP
TPSETVSAYARRLAVEAEAEHPRHVVHRMAKALRPGKVFVDHSQNAAAKTTAAPYTLRAR
PAPTVSTPVTWEEVEACGEPGALVFLPDDLPPRVRRYGDLLRPLVDHAGAGPVPEP
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacggaggtggaggggcggcgcctcccgctcagcaacctggacaaggtc
atccaccccgccacgggcaccaccaagggcgagctcctgcactactacgcgaccgtcgcc
gaggcgctgctgccgcacctgcgggaccggccgctgtccttcctgcgctacccggacggc
cccgacggccagctgttcttcaccaagaacccgccgcccggcacgcccgactgggtgagg
accgcgcccgtcccccggacggaggacccgggtgcccgccaggtggtggtcgaggacctc
ccgtcgctgatgtgggcggcgaacctggtggtcgagttccacaccccgcagtggcgggcg
cgggagccggccgtcgccgaccggatggtcttcgacctcgacccgggcgcccccgccacc
gtcgtcgagtgctgccgcgtcgcgctgtggctgcgcgagcgcctcgcccgggacggcctg
accgcgtacgcgaagacctccggcgccaagggactgcacctgtacgtgccggtcgagccg
acgccctcggagacggtgtccgcctacgcccgccggctcgcggtcgaggccgaggccgag
cacccgcggcacgtcgtgcaccggatggcgaaggcgctgcgccccggcaaggtcttcgtc
gaccacagccagaacgccgccgcgaagaccaccgccgccccctacaccctgcgcgcccgc
cccgccccgaccgtctccacgcccgtgacctgggaggaggtcgaggcgtgcggcgagccg
ggcgccctcgtcttcctcccggacgacctgcccccgcgcgtccggcggtacggcgacctc
ctgcgccccctggtcgaccacgcgggcgcggggccggtgccggaaccgtga
DBGET
integrated database retrieval system
