Streptomyces changanensis: NRO40_22210
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Entry
NRO40_22210 CDS
T09753
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
schg
Streptomyces changanensis
Pathway
schg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NRO40_22210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schg03019
]
NRO40_22210
Messenger RNA biogenesis [BR:
schg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NRO40_22210
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UUS33259
UniProt:
A0ABY5NB72
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Position
4998531..5000216
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AA seq
561 aa
AA seq
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MSHPHPELGAPPKLPQGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGV
DLILPDFTTLKDRLDDIEAVVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGHREVLGAFDCEFIAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRNVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLRVPPGLVVDVKTLDDLPD
HEIVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPKD
RIVIAEDGVVVDLVGGKAKIVGKVQAGYVYVDGLSVGDVTEGALKDRRILGEEGIVSVFL
VVDSTSGKIVGGPFVHARGSGIDDAAFDAVLPKVGEALNKSAQDGVVEPHQLQQLIRRVI
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggtgccccgcccaagctcccccagggcggcctgcgc
gtcaccccgctgggcggtctcggtgagatcggccgcaacatgacggtcttcgagtacggc
ggccgtctgctgatcgtcgactgcggcgtcctcttcccggaggaggagcagccgggcgtc
gacctgatcctgccggacttcacgacgctgaaggaccgtctcgacgacatcgaggcggtg
gtcctcacccacgggcacgaggaccacatcggcggcgtgccgtacctgctccgcctgaag
cccgacatcccgctgatcggctccaagctgaccctcgccctcatcgaggcgaagctccag
gagcaccgcatccgcccctacaccctggaggtggccgaggggcaccgggaggtcctgggc
gcgttcgactgcgagttcatcgcggtcaaccactccatcccggacgccctcgccgtcgcc
atccgcacccccgcgggcatggtggtgcacacgggcgacttcaagatggaccagctcccg
ctggacaaccgcctcaccgacctgcacgcgttcgcccgcctcagcgaggagggcatcgac
ctcctgctgtcggactcgaccaacgccgaggtgccgggcttcgtcccgccggagcgcgac
atctcgaacgtgctgcggaacgtcttcgcgaacgcccagaagcgcatcatcgtggcgagc
ttcgccagccacgtgcaccgcatccagcagatcctcgacgccgcccacgagtacgggcgc
cgcgtggcgttcgtcggccgctcgatggtccgcaacatgggcatcgcccgcgacctgggc
tacctgcgggtgccgccgggcctggtcgtcgacgtgaagacgctggacgacctgcccgac
cacgagatcgtgctcgtctgtaccggctcgcagggcgaaccgatggcggccctgtcccgc
atggccaaccgggaccaccagatccgcatcgtccagggcgacacggtcatcctggcgtcg
tccctgatcccggggaacgagaacgcggtctaccgcgtgatcaacggcctgacccgttgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctcgggtcacgcctccgcc
ggcgagctgctgtacttctacaacatctgccggccgaagaacctgatgccggtccacggc
gagtggcgccacctgcgggccaacgccgagctcggcgcgctgaccggcgtaccgaaggac
cgcatcgtcatcgccgaggacggcgtcgtcgtcgacctggtcggcggcaaggcgaagatc
gtcggcaaggtccaggccggttacgtgtacgtggacggcctctcggtcggcgacgtcacg
gagggcgcgctgaaggaccgccgcatcctcggcgaggagggcatcgtctcggtcttcctc
gtcgtggactccacgtccggcaagatcgtcggcggcccgttcgtccacgcccgcggctcg
ggcatcgacgacgcggcgttcgacgcggtcctcccgaaggtgggcgaggcgctgaacaag
tcggcgcaggacggtgtggtggagccgcaccagctccagcagctgatccgccgcgtcatc
ggcaagtgggtgtcggacacctaccgccgccggccgatgatcctgcccgtggtggtcgag
gtctga
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