KEGG   Streptomyces changanensis: NRO40_22210
Entry
NRO40_22210       CDS       T09753                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
schg  Streptomyces changanensis
Pathway
schg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:schg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NRO40_22210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:schg03019]
    NRO40_22210
Messenger RNA biogenesis [BR:schg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NRO40_22210
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: UUS33259
UniProt: A0ABY5NB72
LinkDB
Position
4998531..5000216
AA seq 561 aa
MSHPHPELGAPPKLPQGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGV
DLILPDFTTLKDRLDDIEAVVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGHREVLGAFDCEFIAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRNVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLRVPPGLVVDVKTLDDLPD
HEIVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPKD
RIVIAEDGVVVDLVGGKAKIVGKVQAGYVYVDGLSVGDVTEGALKDRRILGEEGIVSVFL
VVDSTSGKIVGGPFVHARGSGIDDAAFDAVLPKVGEALNKSAQDGVVEPHQLQQLIRRVI
GKWVSDTYRRRPMILPVVVEV
NT seq 1686 nt   +upstreamnt  +downstreamnt
ttgagtcatccgcatcctgaactcggtgccccgcccaagctcccccagggcggcctgcgc
gtcaccccgctgggcggtctcggtgagatcggccgcaacatgacggtcttcgagtacggc
ggccgtctgctgatcgtcgactgcggcgtcctcttcccggaggaggagcagccgggcgtc
gacctgatcctgccggacttcacgacgctgaaggaccgtctcgacgacatcgaggcggtg
gtcctcacccacgggcacgaggaccacatcggcggcgtgccgtacctgctccgcctgaag
cccgacatcccgctgatcggctccaagctgaccctcgccctcatcgaggcgaagctccag
gagcaccgcatccgcccctacaccctggaggtggccgaggggcaccgggaggtcctgggc
gcgttcgactgcgagttcatcgcggtcaaccactccatcccggacgccctcgccgtcgcc
atccgcacccccgcgggcatggtggtgcacacgggcgacttcaagatggaccagctcccg
ctggacaaccgcctcaccgacctgcacgcgttcgcccgcctcagcgaggagggcatcgac
ctcctgctgtcggactcgaccaacgccgaggtgccgggcttcgtcccgccggagcgcgac
atctcgaacgtgctgcggaacgtcttcgcgaacgcccagaagcgcatcatcgtggcgagc
ttcgccagccacgtgcaccgcatccagcagatcctcgacgccgcccacgagtacgggcgc
cgcgtggcgttcgtcggccgctcgatggtccgcaacatgggcatcgcccgcgacctgggc
tacctgcgggtgccgccgggcctggtcgtcgacgtgaagacgctggacgacctgcccgac
cacgagatcgtgctcgtctgtaccggctcgcagggcgaaccgatggcggccctgtcccgc
atggccaaccgggaccaccagatccgcatcgtccagggcgacacggtcatcctggcgtcg
tccctgatcccggggaacgagaacgcggtctaccgcgtgatcaacggcctgacccgttgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctcgggtcacgcctccgcc
ggcgagctgctgtacttctacaacatctgccggccgaagaacctgatgccggtccacggc
gagtggcgccacctgcgggccaacgccgagctcggcgcgctgaccggcgtaccgaaggac
cgcatcgtcatcgccgaggacggcgtcgtcgtcgacctggtcggcggcaaggcgaagatc
gtcggcaaggtccaggccggttacgtgtacgtggacggcctctcggtcggcgacgtcacg
gagggcgcgctgaaggaccgccgcatcctcggcgaggagggcatcgtctcggtcttcctc
gtcgtggactccacgtccggcaagatcgtcggcggcccgttcgtccacgcccgcggctcg
ggcatcgacgacgcggcgttcgacgcggtcctcccgaaggtgggcgaggcgctgaacaag
tcggcgcaggacggtgtggtggagccgcaccagctccagcagctgatccgccgcgtcatc
ggcaagtgggtgtcggacacctaccgccgccggccgatgatcctgcccgtggtggtcgag
gtctga

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