Streptomyces changanensis: NRO40_25100
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Entry
NRO40_25100 CDS
T09753
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
schg
Streptomyces changanensis
Pathway
schg00040
Pentose and glucuronate interconversions
schg01100
Metabolic pathways
schg02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
schg00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
NRO40_25100
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
NRO40_25100
Enzymes [BR:
schg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
NRO40_25100
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Cadherin_4
Motif
Other DBs
NCBI-ProteinID:
UUS33781
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Position
5748873..5749829
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AA seq
318 aa
AA seq
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MRTARLLLISAATAALLAASVALPQSAGAADGAPVGFGAGTTGGGDAAAVTVSTLGAFKA
AVTGDHPKVVRVNGLIPLSGQVDIGSHTTVLGVGASSGFTGGGLRVKEETNVVIRNLNLS
KPVAPADAVTVTESTKVWIDHNSFSADRDHDKDHYDGLLDVNHGADLVTVSWNTFKDHFK
GSLVGHSDKNASEDTGHLRVTYHHNHFSDVYSRIPSLRFGTGHFYNNYVQGAETACHSRM
GAQMLVENNVFRATKVAVTTSRSSAVDGYANLRGNDLGGATTEISRTGSFTAPPYAYAAE
PASSVVASVTANAGAGRI
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaccgctcgactgctcctcatctccgccgccacggccgccctcctcgccgcctcc
gtcgcgctcccccagtcggcgggcgccgccgacggcgccccggtcgggttcggcgccggc
accacgggtggcggtgacgccgccgccgtcacggtctccacgctcggcgccttcaaggcg
gccgtgaccggcgaccaccccaaggtggtccgcgtcaacggcctgatccccctgtccgga
caggtcgacatcggctcgcacaccacggtgctcggtgtcggcgcgtcctccggcttcacc
ggcggcggactgcgcgtgaaggaggagacgaacgtcgtgatccgcaacctcaacctgtcc
aagccggtcgcacccgccgacgccgtcacggtgaccgagtcgacgaaggtgtggatcgac
cacaactccttctccgccgaccgcgaccacgacaaggaccactacgacggcctgctggac
gtgaaccacggcgccgacctcgtcaccgtctcctggaacaccttcaaggaccacttcaag
gggtccctggtcgggcacagtgacaagaacgcctccgaggacaccggccacctgcgtgtc
acgtaccaccacaaccacttcagcgacgtctactcgcgcatcccgagcctccgcttcggc
accggccacttctacaacaactacgtccagggggccgagacggcctgccactcccggatg
ggcgcccagatgctcgtcgagaacaacgtcttccgggccaccaaggtcgccgtcaccacc
agccgcagcagtgccgtcgacggatacgccaacctccgcggcaacgacctcggcggtgcg
acgaccgagatctcccgcacgggctccttcaccgccccgccgtacgcctacgccgccgaa
ccggcctcgtcggtcgtcgcgtcggtgaccgcgaacgcgggcgccggccggatctga
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