KEGG   Spiroplasma chinense: SCHIN_v1c03770
Entry
SCHIN_v1c03770    CDS       T06905                                 
Symbol
rnj
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
schi  Spiroplasma chinense
Pathway
schi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:schi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SCHIN_v1c03770 (rnj)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:schi03019]
    SCHIN_v1c03770 (rnj)
Messenger RNA biogenesis [BR:schi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SCHIN_v1c03770 (rnj)
SSDB
Motif
Pfam: RNase_J_C RMMBL
Other DBs
NCBI-ProteinID: QEH61574
UniProt: A0A5B9Y3F3
LinkDB
Position
435514..437217
AA seq 567 aa
MAEIKFMALGGQDERGKNTFIVSVDEDLFVFDVGIKFPERSILGIDVVIPSFDFLKANSK
KIKGIFLSNPSSNNAGAISYILREIDAPVYCNELTTTILKYRNLKYRIKNRENNFKIVRD
KEIIEFGKNKVEFFRTTSSFPETFGFALHTEDGVIVYAGDYIMDGSEQSWFSTDMNHLSK
IAEKGVLALISDSEYASRVGYTVPNHRIEKFITAPMKDMKHRLVLGMFEEDVFKLFEIIK
QAKEQGRKMAIYGKTLVKVVESKIIQESLGINKNDIISLNDYMKSDDGILILTGAGDLLY
SRLAKIATGNDDVIEFSEKDTIILATPPAAGVEKRHAEVLDELARTNANIIALSDRNIWS
MRASYEDIKMMTRIMKPKSFIPIKGLYKDFLSAEKAALEAGVKQENIQLINNGQVLKISK
EGKLVIASEMVKTSDVYVDGIGVGDIGAVVLNERKQLATDGAVIIGANIDEKTKELVSLI
DIQMRGVIYIQEDNPIFKLMQKQIIDILDRHRTDTKNNPTAYDLNVIKKEIISRIRSTIK
QDTGKQPIVLVIVNEINISSFYEPRKR
NT seq 1704 nt   +upstreamnt  +downstreamnt
atggcagaaattaaatttatggccttaggtggtcaagatgaaagaggaaaaaacactttc
atagtaagtgttgacgaagatttatttgtatttgatgtaggaattaagtttcctgaaaga
agtatcttaggaattgatgtagtaattccaagttttgactttttaaaagcaaattcaaaa
aaaataaaaggaatctttttatcaaatccaagcagtaataatgctggagcaataagctac
attttaagagaaattgatgcaccagtttactgtaacgaacttacaacaacaatcttaaaa
tacagaaacttaaaatacagaattaaaaatagagaaaacaacttcaagatagttagagat
aaagaaatcattgaatttggtaaaaataaagtagaattctttagaacaacttcaagtttc
ccagaaacttttggttttgcgttacatactgaagatggtgtaattgtttatgcaggtgat
tacataatggatggtagtgaacaatcttgattctcaacagacatgaaccacttgtctaaa
atagctgaaaaaggtgttttagctttaataagtgattcagagtatgcttcaagagttgga
tatactgttccaaatcatagaattgaaaaatttattacagcaccaatgaaagatatgaaa
cacagacttgttttagggatgtttgaagaagatgttttcaagttatttgaaatcattaaa
caagcaaaagaacaagggagaaaaatggcaatttatggtaaaacacttgtaaaagttgtt
gaatcaaaaattattcaagaatctcttgggataaacaaaaatgacattatttcattaaat
gactatatgaaatctgatgatggaatattgattttaactggagctggggatttactttat
tcaagacttgcaaaaattgcaacaggaaatgatgatgtaatagaattctcagaaaaagac
acaattattttagcaactccaccagctgctggggttgaaaaaagacatgcagaagtttta
gatgaacttgcaagaactaatgcaaatatcattgctttaagtgatagaaacatttgatct
atgagagcaagttatgaagacatcaaaatgatgacaagaatcatgaagccaaaaagtttc
attccaataaaaggattatataaagactttttaagtgcagaaaaagctgcacttgaagct
ggagttaaacaagaaaacattcaattaatcaataatggacaagttttaaaaatctcaaaa
gaaggaaaacttgtaattgcatcagaaatggtaaaaacaagcgatgtttatgttgatgga
attggagttggagatattggagctgttgttttaaatgaaagaaaacaattagcaactgat
ggagctgttataattggtgcaaatattgatgaaaaaacaaaagaacttgtttcattaata
gacattcaaatgagaggtgttatctatattcaagaagataacccaatctttaaattaatg
caaaaacaaattattgatattttagatcgtcacagaacagacactaaaaataacccaacg
gcatatgatttaaatgtaattaaaaaagagattatttctagaattagaagcacaattaaa
caagacactggaaaacaaccaatagttcttgtaattgtaaatgaaattaacattagtagc
ttttatgaaccaagaaaaagatag

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