Spiroplasma chinense: SCHIN_v1c03770
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Entry
SCHIN_v1c03770 CDS
T06905
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
schi
Spiroplasma chinense
Pathway
schi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCHIN_v1c03770 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schi03019
]
SCHIN_v1c03770 (rnj)
Messenger RNA biogenesis [BR:
schi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCHIN_v1c03770 (rnj)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QEH61574
UniProt:
A0A5B9Y3F3
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Position
435514..437217
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AA seq
567 aa
AA seq
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MAEIKFMALGGQDERGKNTFIVSVDEDLFVFDVGIKFPERSILGIDVVIPSFDFLKANSK
KIKGIFLSNPSSNNAGAISYILREIDAPVYCNELTTTILKYRNLKYRIKNRENNFKIVRD
KEIIEFGKNKVEFFRTTSSFPETFGFALHTEDGVIVYAGDYIMDGSEQSWFSTDMNHLSK
IAEKGVLALISDSEYASRVGYTVPNHRIEKFITAPMKDMKHRLVLGMFEEDVFKLFEIIK
QAKEQGRKMAIYGKTLVKVVESKIIQESLGINKNDIISLNDYMKSDDGILILTGAGDLLY
SRLAKIATGNDDVIEFSEKDTIILATPPAAGVEKRHAEVLDELARTNANIIALSDRNIWS
MRASYEDIKMMTRIMKPKSFIPIKGLYKDFLSAEKAALEAGVKQENIQLINNGQVLKISK
EGKLVIASEMVKTSDVYVDGIGVGDIGAVVLNERKQLATDGAVIIGANIDEKTKELVSLI
DIQMRGVIYIQEDNPIFKLMQKQIIDILDRHRTDTKNNPTAYDLNVIKKEIISRIRSTIK
QDTGKQPIVLVIVNEINISSFYEPRKR
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaattaaatttatggccttaggtggtcaagatgaaagaggaaaaaacactttc
atagtaagtgttgacgaagatttatttgtatttgatgtaggaattaagtttcctgaaaga
agtatcttaggaattgatgtagtaattccaagttttgactttttaaaagcaaattcaaaa
aaaataaaaggaatctttttatcaaatccaagcagtaataatgctggagcaataagctac
attttaagagaaattgatgcaccagtttactgtaacgaacttacaacaacaatcttaaaa
tacagaaacttaaaatacagaattaaaaatagagaaaacaacttcaagatagttagagat
aaagaaatcattgaatttggtaaaaataaagtagaattctttagaacaacttcaagtttc
ccagaaacttttggttttgcgttacatactgaagatggtgtaattgtttatgcaggtgat
tacataatggatggtagtgaacaatcttgattctcaacagacatgaaccacttgtctaaa
atagctgaaaaaggtgttttagctttaataagtgattcagagtatgcttcaagagttgga
tatactgttccaaatcatagaattgaaaaatttattacagcaccaatgaaagatatgaaa
cacagacttgttttagggatgtttgaagaagatgttttcaagttatttgaaatcattaaa
caagcaaaagaacaagggagaaaaatggcaatttatggtaaaacacttgtaaaagttgtt
gaatcaaaaattattcaagaatctcttgggataaacaaaaatgacattatttcattaaat
gactatatgaaatctgatgatggaatattgattttaactggagctggggatttactttat
tcaagacttgcaaaaattgcaacaggaaatgatgatgtaatagaattctcagaaaaagac
acaattattttagcaactccaccagctgctggggttgaaaaaagacatgcagaagtttta
gatgaacttgcaagaactaatgcaaatatcattgctttaagtgatagaaacatttgatct
atgagagcaagttatgaagacatcaaaatgatgacaagaatcatgaagccaaaaagtttc
attccaataaaaggattatataaagactttttaagtgcagaaaaagctgcacttgaagct
ggagttaaacaagaaaacattcaattaatcaataatggacaagttttaaaaatctcaaaa
gaaggaaaacttgtaattgcatcagaaatggtaaaaacaagcgatgtttatgttgatgga
attggagttggagatattggagctgttgttttaaatgaaagaaaacaattagcaactgat
ggagctgttataattggtgcaaatattgatgaaaaaacaaaagaacttgtttcattaata
gacattcaaatgagaggtgttatctatattcaagaagataacccaatctttaaattaatg
caaaaacaaattattgatattttagatcgtcacagaacagacactaaaaataacccaacg
gcatatgatttaaatgtaattaaaaaagagattatttctagaattagaagcacaattaaa
caagacactggaaaacaaccaatagttcttgtaattgtaaatgaaattaacattagtagc
ttttatgaaccaagaaaaagatag
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