Shewanella chilikensis: GII14_02360
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Entry
GII14_02360 CDS
T08813
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
schk
Shewanella chilikensis
Pathway
schk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII14_02360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schk03019
]
GII14_02360
03009 Ribosome biogenesis [BR:
schk03009
]
GII14_02360
Enzymes [BR:
schk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GII14_02360
Messenger RNA biogenesis [BR:
schk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GII14_02360
Ribosome biogenesis [BR:
schk03009
]
Prokaryotic type
rRNA helicases
GII14_02360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIJ03127
UniProt:
A0A6G7LMW6
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All DBs
Position
complement(498118..499920)
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AA seq
600 aa
AA seq
DB search
MSSSEKTFRELGLSEALLRALDELGYENPTPIQAASIAPLMAGQDILGQAQTGTGKTGAF
ALPLLNATDHNLNAPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLQ
ALRRGPQVVVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILDHTPAE
RQLALFSATMPEQIKRVANKHLNNPATISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKSGKLDILI
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATNSRISPMKVPSPETVAERRLSRLGEQVAATIANEELDFMKGAVAQLCQQLEVDTDI
LAAALLQQVQQERPLQLPPIQERQRDSRDDRSSRDDRGSREDRGSRRRDSRPVPGDLGKA
ESLKDNPDLQMCRYVLDVGREHGVGVGNIVGAIANEASIDSRYIGQIQLFDSLTTVDLPA
GMPKDVLAHLKKVRVCGKPINIREAGSQSFEGEQRPARRPRKHSGERRPDRKPRRRDDRS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaaaaactttccgggaactcggcctctccgaggcattgctgcgtgct
ctagatgagctcggctacgagaacccgaccccaattcaagccgcgagtatcgcccccctg
atggcgggccaggatattcttggccaggcacagacaggtacaggtaaaactggtgccttc
gctctgcctctgcttaatgcaacagatcataacctcaacgcaccgcaaattctggtgctg
gcaccgacccgcgaactggcggtacaggtagctgaagctttctccagctatgccaaattc
atgaaaggtttccatgtactgcctatctatggcggtcaaagcatgcaccaacaactgcag
gcgctgcgtcgcggtcctcaggtagtcgttggtacaccaggccgggtcatggaccatatg
cgccgtggcaccctcaagctcgacagcctcaaggctctggtgcttgatgaagccgatgaa
atgctgaaaatgggctttatcgacgatatcgagtggatcttggatcatactccggccgag
cgtcagctggcactgttctctgccactatgcctgagcagatcaagcgggttgccaacaag
cacctgaacaaccctgccaccatcagcattgccgccagccacaccacggtagactccatc
gagcaacgctttgtacaggtgtcccagcacaacaagctggaagccctggtacgtgtgctc
gaagtggaaaacaccgaaggtatcatcatttttgtgcgtacccgtaactcttgtgtggaa
ctggccgagaagctggaagcccgcggttacgcctcatcaccactgcacggtgatatgaac
caacaggcccgtgagcgcgccgtggatcaactcaagtccggtaagctggacattttgatt
gccaccgacgttgccgcccgtggtctggacgttgagcgtatcggtcacgtggtcaactat
gacatcccttacgataccgaagcctatgtacaccgtatcggtcgtaccggccgcgccggt
cgtaccggtatggcgattctgtttgtgacccacagagagatgcgcatgctgcgcaccatt
gagcgtgccaccaacagtcgtatttccccgatgaaggtgccaagccctgaaactgtggct
gagcgccgtctgtctcgccttggcgaacaggttgctgccaccatagccaacgaagagctg
gactttatgaaaggcgctgtggctcagctgtgtcagcagttggaagtggacacagatatt
ctggcggccgcactgctgcaacaggtacagcaagagcgtccgctgcagttgcctccgatc
caggagcgtcagcgtgacagccgtgatgatcgcagctcacgcgacgatcgtggttcacgg
gaagatcgcggttcgcgtcgtcgcgactctcgtccggttcccggcgatctcggcaaggcc
gaatccctgaaggataacccggatctgcagatgtgccgttacgtgctggatgtgggtcgt
gagcacggcgtgggtgtgggcaatatcgtaggtgccatcgccaacgaagccagtatcgac
agccgttacataggccagatccaactgtttgactctctgactacagtcgatctgcctgcc
ggtatgcctaaagacgtactggcgcacctgaagaaagttcgggtatgcggcaagcctatc
aatatccgtgaagccggtagccagagcttcgaaggtgaacagcgtccagctcgtcgccct
cgcaagcactcaggagagcgtcgtccggatcgtaagccccgtcgtcgtgatgaccgcagc
tga
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